LOCUS       FM179324                2824 bp    DNA     linear   BCT 24-JUL-2016
DEFINITION  Lactobacillus rhamnosus Lc 705 plasmid sequence, strain Lc 705.
ACCESSION   FM179324
VERSION     FM179324.1
DBLINK      BioProject: PRJEA32197
            BioSample: SAMEA2272728
KEYWORDS    complete genome.
SOURCE      Lactobacillus rhamnosus Lc 705
  ORGANISM  Lactobacillus rhamnosus Lc 705
            Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
            Lactobacillus.
REFERENCE   1
  AUTHORS   Kankainen,M., Paulin,L., Tynkkynen,S., von Ossowski,I., Reunanen,J.,
            Partanen,P., Satokari,R., Vesterlund,S., Hendrickx,A.P., Lebeer,S.,
            De Keersmaecker,S.C., Vanderleyden,J., Hamalainen,T., Laukkanen,S.,
            Salovuori,N., Ritari,J., Alatalo,E., Korpela,R.,
            Mattila-Sandholm,T., Lassig,A., Hatakka,K., Kinnunen,K.T.,
            Karjalainen,H., Saxelin,M., Laakso,K., Surakka,A., Palva,A.,
            Salusjarvi,T., Auvinen,P. and de Vos,W.M.
  TITLE     Comparative genomic analysis of Lactobacillus rhamnosus GG reveals
            pili containing a human- mucus binding protein
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 106 (40), 17193-17198 (2009)
   PUBMED   19805152
REFERENCE   2  (bases 1 to 2824)
  AUTHORS   Paulin,L.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2008) Paulin L.G., Institute of Biotechnology,
            University of Helsinki, PObox 56 (Viikinkaari 4), 00014 Helsinki,
            FINLAND
FEATURES             Location/Qualifiers
     source          1..2824
                     /organism="Lactobacillus rhamnosus Lc 705"
                     /mol_type="genomic DNA"
                     /strain="Lc 705"
                     /db_xref="taxon:568704"
                     /plasmid="pLC1"
     gene            1..1881
                     /gene="ebgA"
                     /locus_tag="LC705_p00049"
     CDS             1..1881
                     /gene="ebgA"
                     /locus_tag="LC705_p00049"
                     /codon_start=1
                     /transl_table=11
                     /product="GH2"
                     /protein_id="CAR91801.1"
                     /db_xref="EnsemblGenomes-Gn:LC705_p00049"
                     /db_xref="EnsemblGenomes-Tr:CAR91801"
                     /db_xref="GOA:C7TNH4"
                     /db_xref="InterPro:IPR006101"
                     /db_xref="InterPro:IPR006102"
                     /db_xref="InterPro:IPR006103"
                     /db_xref="InterPro:IPR006104"
                     /db_xref="InterPro:IPR008979"
                     /db_xref="InterPro:IPR013781"
                     /db_xref="InterPro:IPR013812"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR023230"
                     /db_xref="InterPro:IPR023232"
                     /db_xref="UniProtKB/TrEMBL:C7TNH4"
                     /translation="MQANLQWLDDPEVFRVNQLPAHSDHHYYHDTAEFKTGSRFIKSLN
                     GAWRFNFAKTPAERPVDFYQPDFDATDFDTIQVPGHIELAGYGQIQYINTLYPWEGKIY
                     RRPPYTLNQDQLTPGLFSDAADNTVGSYLKTFDLADAFKGQRIIIQFQGVEEALYVWLN
                     GHFIGYAEDSFTPSEFDLTPYIQDQGNVLAVRVYKRSTAAFIEDQDMFRFSGIFRDVNI
                     LAEPASHITDLDIRPVPNANLKSGELNITTKVTGEPATLALTVKDHDGRVLTSQTQTGS
                     GSVTFDTMLFDQLHLWSPQTPYLYQLTIEVYDADHQLLEVVPYQFGFRTVELRDDKVIY
                     VNNKRLVINGVNRHEWNAHTGRVISMADMRADIQTMLANNINADRTCHYPDQLPWYQLC
                     DEAGIYLMAENNLESHGSWQKMGAIEPSYNVPGDNPHWLAAVIDRARSNYEWFKNHPSI
                     IFWSLGNESYAGEDIAAMQAFYKEHDDSRLVHYEGVVYTPELKDRISDVESRMYEKPQN
                     IVAYLEDNPTKPFLDCEYMHDMGNSLGGMQSYNDLIDKYPMYQGGFIWDFIDQALFVHD
                     PITDQDVLRYGGDFDDRHSDYEFSGDGLMFADRTPKPAMQEVKYYYGLHK"
     gene            1865..2824
                     /gene="lacZ"
                     /locus_tag="LC705_p00050"
     CDS             1865..2824
                     /gene="lacZ"
                     /locus_tag="LC705_p00050"
                     /codon_start=1
                     /transl_table=11
                     /product="Beta-galactosidase small subunit"
                     /protein_id="CAR91802.1"
                     /db_xref="EnsemblGenomes-Gn:LC705_p00050"
                     /db_xref="EnsemblGenomes-Tr:CAR91802"
                     /db_xref="GOA:C7TNH5"
                     /db_xref="InterPro:IPR004199"
                     /db_xref="InterPro:IPR011013"
                     /db_xref="InterPro:IPR014718"
                     /db_xref="UniProtKB/TrEMBL:C7TNH5"
                     /translation="MAYTNNQLHVIYGDGSLGLQGANFHYLFSYERGGLESLVVNDKEW
                     LYRTPTPIFWRATTDNDHGSGFSVKSAQWYAADKFSTCQDIELTVDDQPVTPLPIAPLN
                     NKYTDHEIATKVSLAYHFVTTTVPSTIVTVTYTVTADGQINIATHYSGQSDLPELPAFG
                     LRFIMPTTATGFDYTGLSGETYPDRLAGATHGQFHVDSLPVTPYLVPQECGMHMQTEQV
                     TVTRSTTQNNADHDNTPFSLTFSQADAPFAFSCLPYTAAELENATHMEELPLARRTVLS
                     IYGAVRGVGGIDSWGTDVEAPYHILADQDIDFSFNIHF"
ORIGIN
        1 atgcaagcta atcttcaatg gttagatgac ccagaagtct tccgggtcaa ccaattacct
       61 gcacatagtg atcaccatta ttatcacgac acagcagaat tcaaaacggg tagtcgcttc
      121 atcaagagtc tcaatggcgc ttggcgtttt aacttcgcca agacaccggc tgaacgccca
      181 gttgattttt atcaacccga tttcgatgca accgactttg atacgattca agttcccggt
      241 catattgaac tagccggcta tggtcaaatt caatacatta acacgctata cccatgggaa
      301 ggtaaaattt accgtcgccc accgtatacc ctcaatcaag atcaattaac accaggccta
      361 ttcagcgacg ctgcggacaa caccgtcggc tcgtacctca aaaccttcga tctcgctgat
      421 gcttttaaag ggcaacgtat tatcattcag ttccaagggg tagaagaagc cctgtacgtc
      481 tggttaaatg gccattttat tggctacgct gaagatagtt tcaccccttc agaatttgat
      541 ttgacgccgt atattcagga ccaaggtaac gttttagcgg ttcgggtcta caaacgcagt
      601 actgctgcct ttattgaaga ccaagatatg ttccgtttct ctggtatttt ccgtgacgtc
      661 aatatactgg cggagcctgc tagccatatt actgatttgg acatccgacc agttccaaat
      721 gccaatctca aaagtggtga gctcaacatc actactaaag taaccggcga accagccact
      781 ttagcgctga ccgttaaaga ccatgacggg cgagtactga cgagtcaaac gcaaaccggt
      841 agtggcagtg taacctttga tactatgtta ttcgaccaac tgcacttgtg gtcaccacaa
      901 acgccgtatc tctatcaatt gacaattgaa gtttacgatg ctgatcacca actcttggaa
      961 gtcgtcccat atcagtttgg gttccggacg gtcgagctgc gcgatgacaa agtcatttac
     1021 gtcaacaata aacggttggt gatcaacgga gttaaccggc acgaatggaa cgcccacacc
     1081 ggtcgcgtta tcagtatggc tgatatgcgc gctgatatcc aaaccatgtt agctaacaat
     1141 atcaatgccg atcggacctg ccattatcct gatcaattac cttggtatca attatgtgac
     1201 gaggccggta tctacctaat ggccgaaaac aacctcgaat cgcacgggtc atggcaaaag
     1261 atgggggcta tcgagccttc ttacaatgtt cctggcgata atccacactg gttagcagcg
     1321 gtgatcgacc gggcccgttc aaactacgaa tggtttaaaa accacccatc gatcattttt
     1381 tggtcacttg gcaatgaatc gtatgctggc gaagatatcg cggcgatgca ggctttttat
     1441 aaagaacacg atgattcacg actcgtccac tacgaaggcg ttgtctacac accagaatta
     1501 aaagatcgca tttctgatgt tgaaagtcgg atgtacgaaa agccccaaaa tattgtagct
     1561 tacttggaag ataacccaac caaacctttc ctagattgtg aatatatgca tgacatgggg
     1621 aattctctgg gcggtatgca atcatataat gatttgatcg acaagtatcc aatgtatcaa
     1681 ggtggcttta tttgggactt tattgatcaa gcactcttcg ttcatgaccc aatcaccgac
     1741 caagacgtgc tccggtatgg cggtgatttc gacgaccgcc actccgatta tgaattctcc
     1801 ggtgacggct taatgtttgc cgaccggaca ccaaaaccag caatgcaaga ggtgaaatat
     1861 tattatggct tacacaaata atcaactaca cgttatttac ggcgacggga gtttaggact
     1921 acagggggct aatttccact acctctttag ctacgaacgt ggcggacttg aatcactcgt
     1981 cgtcaacgat aaagagtggc tctatcgtac acccacgccc atcttttggc gggcgacaac
     2041 cgataatgat cacggtagcg gcttttcagt caaatccgca cagtggtacg cggccgataa
     2101 gttctcaact tgtcaagata tcgaattgac ggttgacgac caaccagtca caccgttacc
     2161 aatcgcgcca ctcaataaca aatacacgga tcacgaaatc gccacgaaag tctctctggc
     2221 ttaccacttc gttaccacga ccgttcctag taccatcgtc acagtgactt atacggtgac
     2281 agcagacggt cagatcaata tcgccaccca ttatagcggt cagtctgatt tgccagagct
     2341 acccgcattt ggtctgcggt ttatcatgcc gactaccgcg accggcttcg actataccgg
     2401 tttgtccggt gagacttatc ctgaccggct ggctggcgca acacacgggc aattccacgt
     2461 tgacagtctg ccagtcacac catacttggt cccacaagaa tgcggcatgc acatgcaaac
     2521 tgaacaagtg acagtaacgc gatcaaccac acaaaataac gctgaccacg acaacacacc
     2581 attcagtttg acatttagcc aagccgatgc accattcgcc ttcagctgcc ttccctatac
     2641 cgctgctgaa ctagaaaacg caacacacat ggaagaatta ccattagcac ggcgaacggt
     2701 cttatcaatc tacggtgccg ttcgtggggt cggtggcatt gatagttggg gaacggacgt
     2761 agaagcccca tatcatatcc tcgctgatca agacattgac ttcagcttta acattcattt
     2821 ctaa
//
