LOCUS       NZ_BLYL01000002         5343 bp    DNA     linear   CON 21-MAR-2021
DEFINITION  Coprococcus eutactus strain JCM 31265 sequence02, whole genome
            shotgun sequence.
ACCESSION   NZ_BLYL01000002 REGION: 70950..76292
VERSION     NZ_BLYL01000002.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00220748
            Assembly: GCF_016586415.1
KEYWORDS    WGS; RefSeq; STANDARD_DRAFT.
SOURCE      Coprococcus eutactus
  ORGANISM  Coprococcus eutactus
            Bacteria; Firmicutes; Clostridia; Eubacteriales; Lachnospiraceae;
            Coprococcus.
REFERENCE   1
  AUTHORS   Tanno,H., Fujii,T., Hirano,K., Maeno,S., Tonozuka,T., Sakamoto,M.,
            Ohkuma,M., Tochio,T. and Endo,A.
  TITLE     Characterization of fructooligosaccharide metabolism and
            fructooligosaccharide-degrading enzymes in human commensal butyrate
            producers
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5343)
  AUTHORS   Tanno,H., Maeno,S. and Endo,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2020) Contact:Akihito Endo Tokyo University of
            Agriculture, Department of Food, Aroma and Cosmetic Chemistry; 196
            Yasaka, Abashiri, Hokkaido 099-2493, Japan URL
            :https://www.nodai.ac.jp/academics/bio/o_food/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BLYL01000002.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Platanus_B v. 1.3.2
            Genome Coverage       :: 1500x
            Sequencing Technology :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/21/2021 00:16:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,945
            CDSs (total)                      :: 2,874
            Genes (coding)                    :: 2,794
            CDSs (with protein)               :: 2,794
            Genes (RNA)                       :: 71
            rRNAs                             :: 3, 5, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 7 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 18 of 80
            Pseudo Genes (incomplete)         :: 58 of 80
            Pseudo Genes (internal stop)      :: 12 of 80
            Pseudo Genes (multiple problems)  :: 8 of 80
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5343
                     /organism="Coprococcus eutactus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="sequence02"
                     /strain="JCM 31265"
                     /culture_collection="JCM:31265"
                     /db_xref="taxon:33043"
     gene            complement(1..210)
                     /locus_tag="JMF79_RS02630"
                     /old_locus_tag="COEU31_05220"
     CDS             complement(1..210)
                     /locus_tag="JMF79_RS02630"
                     /old_locus_tag="COEU31_05220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004850322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="WP_055222898.1"
                     /translation="MPLYNRLKEYRAKLGVNQQEMGALVQTSRQTISQIERGDYSPSV
                     TLALKIAKVCGASVEDIFQYEEDEE"
     gene            complement(261..890)
                     /locus_tag="JMF79_RS02635"
                     /old_locus_tag="COEU31_05230"
     CDS             complement(261..890)
                     /locus_tag="JMF79_RS02635"
                     /old_locus_tag="COEU31_05230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015533572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_055223220.1"
                     /translation="MLKKHKLGDVIAEICDMTELEREIRQGLENGLPVYGFFRNKQMW
                     SCFIFEKEEIARDSLTPEPESGKDMLSIYKLRKYYIHPDVDNLTEDMMEAAHGNMYQK
                     VIDVFGDDKSDGFFLRDKIYVCKRDKTTGAPLGIIIGVALGIVYGMLFDNLALGISIG
                     FCFGISFSMIWGTSTHKYAEHGLADRAEAEDADNVIKGLGSDGEDGINR"
     gene            complement(1335..2864)
                     /locus_tag="JMF79_RS02640"
                     /old_locus_tag="COEU31_05240"
     CDS             complement(1335..2864)
                     /locus_tag="JMF79_RS02640"
                     /old_locus_tag="COEU31_05240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015533571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="WP_082431264.1"
                     /translation="MDINGKMAGKNVVSEALAASRKYETQNEIDKNERPLFHVTPPVG
                     WMNDPNGFSVYNGKVHLFYQYHPYSTEWGPMHWGHQVSDDLIRWEQLPVAIAPDTIYD
                     AEGCFSGTAIEKDGEHVLIYTSVMKNPDGDGVLQNQSIAVGDGVTYKKIQNNPVVTGD
                     MLPEGLSRADFRDPKAWLEDGRYYMAAGCVDQDNKGLVVLLSSADMESWTFESILARN
                     EDDLGGIWECPDFFKLDDHHVLLVSPTGMKAEGYEFHNGNNSIYFVGEFDKGEKKFDG
                     GEPLSLDYGTDFYAPQTTLLPDGRRIMIAWMQSWHNLWIPGGQKWQGMMTIPREISLK
                     NGRLIQKPVREIEKYHANMVRYSDEVVSGRRSLEGISGRSLDVTFVITGNKYSRFTVN
                     LAKGSGYYTRFIYDRENNIIEMDRTFAGFEKDVVCIRRACVKSAECYGDVKEKVDEQQ
                     EAQDSIKLRFILDRNSIELFVNDGAMTMSTAIYTPIEADGIELLCEGQAVVDVEKYDI
                     I"
     gene            complement(3191..4384)
                     /locus_tag="JMF79_RS02645"
                     /old_locus_tag="COEU31_05250"
     CDS             complement(3191..4384)
                     /locus_tag="JMF79_RS02645"
                     /old_locus_tag="COEU31_05250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005343085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="WP_021388559.1"
                     /translation="MSEKRRDNKNRILRTGESQRKDGRYAYKYIDTFGKPQFVYSWKL
                     VPTDKTPAGKRDDIALREKEKEIQKDLDDGIDHIGKKMTVCQLYAKQIRHRANVRHGT
                     KQGRKQLMRILQEDKLGACRIENVKLSDAKEWALRMKEKGYGFKTINNHKRSLKAAFY
                     TAIQDDCIRKNPFDFQLNTVLEDDTEPKEPLSPTQEAAFLSFVQHDKVYQKYYDEIII
                     LLGTGLRISELCGLTEADIDLGKQLINVDHQLLKIADVGYYVETPKTKSGNRVIPMSE
                     KVLEAFQRVLNKRKYAQPVILEGYTKFLFLNRNGLPKVAVNYESMFRGLVRKYNKTQK
                     VALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNYYAHTTSETSITEM
                     KRLIA"
     gene            complement(4464..4667)
                     /locus_tag="JMF79_RS02650"
                     /old_locus_tag="COEU31_05260"
     CDS             complement(4464..4667)
                     /locus_tag="JMF79_RS02650"
                     /old_locus_tag="COEU31_05260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002983016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excisionase family DNA-binding protein"
                     /protein_id="WP_009905235.1"
                     /translation="MNNNDVPIWEKYTLTIEEAAKYFRIGESKLRKLAEENPVPDWVM
                     MNGNRIQIKRKQFEKMIDTVDAI"
     gene            complement(5086..5343)
                     /locus_tag="JMF79_RS02655"
                     /old_locus_tag="COEU31_05270"
     CDS             complement(5086..5343)
                     /locus_tag="JMF79_RS02655"
                     /old_locus_tag="COEU31_05270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019727567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_055222897.1"
                     /translation="MNGLNGKPTEYPENTLVPYPVILAASKGDPDAMKIVLQHFSGYI
                     ARLSMRKLYDERGNVYFGVDEEIRERLQTKLMRAILTFKAE"
     gene            complement(5324..>5343)
                     /locus_tag="JMF79_RS02660"
                     /old_locus_tag="COEU31_05280"
     CDS             complement(5324..>5343)
                     /locus_tag="JMF79_RS02660"
                     /old_locus_tag="COEU31_05280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016283905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="WP_055222895.1"
                     /translation="MTPNRREFEKQCAFQKFCKSVLHNEACNAHEEIRRRRVREVTFS
                     DLALHEERQLYTVDKYFQDEEAEPSYQMAGKEITPKLLLEAIRALPEERRKIVLLYYF
                     EGLTDIEIGKQLNISRSTVQYRRTSSFEQLKKYLEENADEWIEW"
ORIGIN      
        1 tcactcctca tcttcctcat attggaagat atcctccaca ctggcaccac acacctttgc
       61 gatcttgagt gccagagtca ccgatggact gtaatctccc ctctctatct gacttatcgt
      121 ctgcctcgag gtctgcacca acgctcccat ctcctgctgg tttactccca gcttcgcccg
      181 atattccttc agcctgttgt acagcggcat ctatatcacc tccagcttgt taatctgtat
      241 tgtcatcata atcaggtcca ttatctgttt atgccgtcct ctccatcaga gcccaatcct
      301 tttattacat tgtccgcatc ttcagcttct gctctgtctg ccagcccatg ctctgcatac
      361 ttatgtgtgg atgtccccca tatcatggaa aagcttattc caaaacagaa tccaatggaa
      421 attccaagcg ccaaattgtc aaacagcatt ccatacacta taccaagtgc aacacctatg
      481 ataattccaa gtggtgcgcc agtggtttta tcgcgcttac acacatatat tttatccctc
      541 aaaaagaatc catcactctt atcatcgcca aatacatcta tcactttctg atacatattg
      601 ccatgtgcag cctccatcat atcttccgtc agattgtcca catcaggatg aatataatac
      661 tttctaagct tatatatact tagcatatcc ttgccactct ctggttcagg cgtcaacgaa
      721 tccctagcaa tctcttcttt ctcaaaaata aagcagctcc acatctgctt gtttctgaag
      781 aaaccataca cagggagtcc attttccaga ccttggcgga tttcgcgctc aagctcagtc
      841 atatcacaga tctcagcaat aacatcccct agcttgtgct tctttaacat tctttctgtg
      901 atcggtgtca cggaatatcc cttgacctgt gtcttcaatt tgtccactgg ttgggagacg
      961 atcatgcccc caaacatagc ttgtagtgtt tcacaggtag atttcttatt acctttatcc
     1021 atgccatttt cacttagatt gtccttttta tttacacctt gcttttccct catatcctca
     1081 taactccatt ttaattctta ccactaaaat cccattccaa attcaagcta tatatattat
     1141 atatgccaaa tgacaactat agttgtcatt tcttttacaa tggagtataa caaatgacaa
     1201 ggaaagttgt caataacttt tgacaacttt ccttgtcatc tcaatgttgg aacggaggca
     1261 cctgaaacct ggagaaccgc cagactgatg cctggcagtg caacaactaa acaattgagc
     1321 aagatcatct tttgttaaat tatatcatac ttctccacat ccacgactgc ctgtccctca
     1381 cataacagct ctattccatc cgcttcaata ggtgtatata tcgccgtgct cattgtcata
     1441 gctccatcat ttacaaacag ctctatcgaa ttcctgtcca gtataaatct gagctttata
     1501 ctatcttgag cctcctgctg ttcatcaacc ttttccttga catccccgta acattctgct
     1561 gatttcacgc aggcccttct gatacacacc acatctttct caaatccggc aaaagtcctg
     1621 tccatctcta ttatattatt ttctctgtca tatataaatc gagtataata tccgcttccc
     1681 tttgccagat tcacggtaaa tctgctgtat ttgtttccag tgattacaaa tgtcacatcc
     1741 agacttcttc cacttatacc ttccagacta cgccgtccac tcactacttc atctgagtac
     1801 ctgaccatat tagcatgata cttctctatc tctctcactg gcttctgtat caagcgtcca
     1861 tttttcagag atatctccct cggaatcgtc atcattccct gccacttctg tccaccgggt
     1921 atccacagat tatgccatga ctgcatccac gctatcatta tccttctgcc atccggcaaa
     1981 agtgtagtct gaggcgcgta gaaatctgtt ccataatcaa gtgataatgg ctctccaccg
     2041 tcaaatttct tctcaccttt atcaaattct ccaacaaaat agatagaatt atttccattg
     2101 tggaattcat atccctctgc cttcattccc gtaggcgata cgagaagtac atgatgatcg
     2161 tctaatttga agaaatcagg gcattcccat atgccgccca gatcatcttc attccgtgca
     2221 aggatactct caaatgtcca gctttccata tcagcgctcg aaagtagtac cacaagcccc
     2281 ttattatcct gatccacaca gcctgcagcc atatagtatc tgccatcctc aagccatgcc
     2341 ttcggatctc tgaaatccgc tctgctcaat ccctccggca gcatatctcc ggtcaccacc
     2401 gggttattct gtattttttt atatgtaacg ccatcaccaa ccgctatgct ctggttctgc
     2461 aataccccat caccgtcggg atttttcata acactggtat atatcaggac atgctctcca
     2521 tctttttcaa tggccgtacc tgagaaacag ccctcggcat catatatcgt atcaggtgca
     2581 atcgccacag gaagctgctc ccatcttatc aaatcgtcac tgacctgatg cccccaatgc
     2641 ataggtcccc attccgtact gtacggatga tactggtaaa acaaatgcac cttaccatta
     2701 tacacagaaa atccattcgg atcattcatc caaccgacag gcggagtcac atgaaacaac
     2761 ggtcgctcat tcttatctat ttcattctga gtttcgtatt tcctcgatgc agcaagtgcc
     2821 tcgctaacca cattttttcc cgccatcttc ccatttatat ccatctcttt ttctccttta
     2881 tacttacatg gtttatattt tgcgttcttt caaataacac atttaaatca ataaaaatag
     2941 agacatttcc actgtaccat acatagcatc tcttgaaaat gtccctaaat aaatttattt
     3001 cctattttat aataaatcac aaagtaattt ttgattatct tttcaaaagt tcttatatgc
     3061 cggtatagcc tattgttaca ggcttttccg gcatttttca ttgtggaaga tactctcaaa
     3121 tcttcttata tccccgtatg ttttggtgtt caaaagtagt aggtggagta gtaaattctc
     3181 cgtttactac ttaggcaatc agccgcttca tttctgttat cgacgtttcg gaagtcgtat
     3241 gcgcgtaata gttcagcgtc atattgatgt tggaatgtcc catgatgtac tgcaatgcct
     3301 ttgggttcat tcctgcattt gctaacgtgg tgcagaatgt gtggcgtaag gtgtgcggtg
     3361 tcattacctt tggcaatgct accttttgcg ttttgttgta tttccttaca agcccccgga
     3421 acatactttc atagttgact gccacttttg gcaaaccgtt ccggttaagg aacagaaact
     3481 ttgtgtagcc ttctaaaata acaggctgtg catatttccg cttgttcagc acccgctgaa
     3541 atgcttctaa cactttttca ctcataggaa taacccggtt gccgcttttc gtcttaggcg
     3601 tttccacata gtagcccacg tctgcaatct tcaaaagttg gtggtctaca ttgataagct
     3661 gtttgcctaa gtcaatgtca gcttccgtca gtccgcagag ttccgaaatg cgaagccctg
     3721 tccctaacag tatgataatc tcgtcgtagt atttctgata gactttatca tgctgcacaa
     3781 aggacagaaa agccgcttcc tgcgtagggg atagaggttc ctttggttcc gtatcatctt
     3841 caaggactgt gttcaactgg aagtcaaatg gatttttacg aatacaatcg tcctgtatgg
     3901 ctgtgtaaaa ggcagccttt aaggaacgct tgtggttgtt gatagtcttg aagccgtaac
     3961 ctttttcttt catgcgtaac gcccattcct ttgcgtcgga gagcttcaca ttttcaatcc
     4021 ggcaggctcc aagtttatcc tcctgcaaaa tccgcatgag ctgttttcgc ccctgctttg
     4081 taccatgccg cacatttgcc cggtggcgta tctgctttgc gtagagttgg cagaccgtca
     4141 ttttctttcc gatatggtcg ataccgtcgt caaggtcttt ttggatttct ttctcttttt
     4201 ccctcaacgc tatatcgtcg cgctttcctg ccggggtttt gtccgtaggc actaacttcc
     4261 aagaatacac aaactgcggt ttcccaaagg tatctatata tttgtaggca tatctcccgt
     4321 cttttctctg gctctctccg gtgcggagaa tacgattttt attatcccgt cttttttccg
     4381 acatcgttat gctcctttcc ataatggaaa gagccttgat atgcttgact atattgtacc
     4441 acattcaagg ctcgatttca ctatcagatt gcgtccaccg tatcaatcat tttttcaaat
     4501 tgcttacgct taatctgaat acggtttccg ttcatcatta cccagtccgg gacgggattt
     4561 tcttctgcca gtttccgcag cttgctttct ccgatacgga aatattttgc tgcctcttct
     4621 atggtaagcg tgtacttttc ccaaatcggc acgtcgttat tgttcaattt gtcgtccccc
     4681 tttcttaatg ggtcaaaaat caatctgtaa cataggcttt aatcggacgg ctattagcgt
     4741 aacctcatgg gacttgcacc cctccggcgg tctgccgaag ccctacccat tgcctgcgac
     4801 gcttctaacg ctcggactat ggctataagg aagtatcatt atgtattctg tgcgttatcg
     4861 cccgcaggct gctatctctg ctttacggtg tggtatttct cgctcgcttt tctattaaga
     4921 gaaaggtcat ggcgtatcca ccgcatggct cggcacaaaa ggaacgtatc cgatttgcct
     4981 tatactgcgt cgccgttcta ttgcgccgct ttctttatca aagagcagag ggctgttctg
     5041 cgatatggaa cagaaaaggg ggaagcgctc caataccgcg ttggtttatt cagccttaaa
     5101 tgtgaggatt gccctcatca gttttgtttg cagcctttcg cgtatttctt cgtctactcc
     5161 aaaataaaca tttcctcgct catcatagag ctttcgcatg gaaagacggg ctatgtagcc
     5221 gctgaaatgt tgcaatacaa tcttcattgc gtccgggtcg ccctttgacg ctgccagtat
     5281 gacaggataa ggtacaaggg tgttctccgg gtactcggtc ggtttaccat tcaatccatt
     5341 cat
//

