LOCUS       NC_021020               5560 bp    DNA     linear   CON 17-APR-2023
DEFINITION  Faecalibacterium prausnitzii SL3/3, complete sequence.
ACCESSION   NC_021020 REGION: 989705..995264
VERSION     NC_021020.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3138352
            Assembly: GCF_000209855.1
KEYWORDS    RefSeq.
SOURCE      Faecalibacterium prausnitzii SL3/3
  ORGANISM  Faecalibacterium prausnitzii SL3/3
            Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae;
            Faecalibacterium.
REFERENCE   1
  AUTHORS   Pajon,A., Turner,K., Parkhill,J., Duncan,S. and Flint,H.
  CONSRTM   metaHIT consortium -- http://www.metahit.eu/
  TITLE     The genome sequence of Faecalibacterium prausnitzii SL3/3
  JOURNAL   Unpublished
REFERENCE   2
  AUTHORS   Pajon,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAR-2010) Sanger Institute, Wellcome Trust Genome
            Campus, Hinxton, Cambridge CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FP929046.1.
            This is a reference genome for the metaHIT project DNA source:
            Rowett Institute of Nutrition and Health, University of Aberdeen --
            http://www.rowett.ac.uk/divisions/ghp/ Sequencing technology: 454
            Genome coverage: 20x
            Annotation was added using ab initio prediction IMG/ER --
            http://img.jgi.doe.gov/submit (Markowitz, Szeto et al. 2007).
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 04/17/2023 00:57:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,219
            CDSs (total)                      :: 3,145
            Genes (coding)                    :: 3,077
            CDSs (with protein)               :: 3,077
            Genes (RNA)                       :: 74
            rRNAs                             :: 1 (23S)
            complete rRNAs                    :: 1 (23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 12 of 68
            Pseudo Genes (incomplete)         :: 56 of 68
            Pseudo Genes (internal stop)      :: 6 of 68
            Pseudo Genes (multiple problems)  :: 6 of 68
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5560
                     /organism="Faecalibacterium prausnitzii SL3/3"
                     /mol_type="genomic DNA"
                     /strain="SL3/3"
                     /db_xref="taxon:657322"
     gene            1..3072
                     /locus_tag="FPR_RS04860"
                     /old_locus_tag="FPR_09740"
     CDS             1..3072
                     /locus_tag="FPR_RS04860"
                     /old_locus_tag="FPR_09740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006735319.1"
                     /GO_function="GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /GO_process="GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="WP_015537135.1"
                     /translation="MAQKKKDSKMMGKIIKTAVSGVLCVALAGGIVAANVLIPPNASS
                     VQSILGLKSGGIDNSKAKTEGINMEYGKPGFDTEDALVEDEIALNKQIAAEGIVLLKN
                     DEGRMPYSTDTTFSFVSHSAVSYIGGNKVDMKTAFEDAGFGVNEDLWKFYSEGNGKDY
                     GLGVGSVSYGDDEDFSINECPLSVMKAEPGLTDSMKNTVPVFVFSRVAGEGRDMPRSM
                     YNHTDVEEDKTKTYLEPDSTELEILQYLNDNFDDVVLLLNSSAAVDLSWVENYPNIHT
                     VISAPAMGDYGLCSLAEIFSGKVNPSGRTVDTYEVDAMNSPAAQNFGDFAYYDENGNL
                     TKYNYVSYKEGIYVGYRYYETRYEDKVLGQGNAGDYNYADAVMYPFGYGLSYTDFEWS
                     DYDTSWDGDTCTVTVKVTNTGDVAGKDVVQVYAQSPYTDYDKANKVEKAAVELVGYAK
                     TAELAPGASETVKITFDQEQLKSYDYVNAKTYILDAGDYYITAAKNAHEAVNNILSAK
                     GKTVEDGMTADGDTAFVATYTPANGTVDTTTYKLDTTTGVEITNQLDHANGGLQYLSR
                     SDWTGTWPTVDGEVSDQISTWGNPINGTDASGKAASYTYRKTISKEDLAKLDSFDSLN
                     PTDFSTLTDEIVYGKDNGLGLIDMRGLDYNDPKWNDLLDQLTPSDYQTLITQSGYGTA
                     AIKSVDKPSTTDRDSATGLINYGFDASGNLYFKGNITHCGVIVLAQTYNDDLAYHYGE
                     NIGDESYYLGVDGWYAPAVNMHRTAFSGRNSEYYSEDPFIGGHIASLECEGVASRGMY
                     VFVKHYAINDQEDHRGDREGQYSIATFLNEQAAREIYLKPFEMCVKSDKVEMNYAKDN
                     GDGTYSNATTEIPSVTGIMTSFNRVGYTWAGGNYNMITGLLRNEWGFHGFIITDNANT
                     GVFMDAGQMIQAGADGKLTNLPTGARYTFNKDDVADYHYGREAIHNILYTIANSKAMN
                     GGMPGSRYLAKVEPYQKVIYAVDGVCGGLIAVLVVLTILRFRKKKEDVKTV"
     gene            3143..5560
                     /locus_tag="FPR_RS04865"
                     /old_locus_tag="FPR_09750"
     CDS             3143..5560
                     /locus_tag="FPR_RS04865"
                     /old_locus_tag="FPR_09750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015537136.1"
                     /GO_function="GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /GO_process="GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="WP_015537136.1"
                     /translation="MKHTDIIKSLSLEQKCALLSGGTVFTTRALPGKGIPAITLSDGP
                     NGVRKQAGAADHLGLNPSVPATCFPTSATVANSWDPELGEAVGAAMGEEAAAQGVSVL
                     LGPGLNIKRSPLCGRNFEYFSEDPYLAGKMAAAYVRGIQKNGIAACPKHFAVNSQELR
                     RMASDSIVDERTLREIYLTSFEMVVKEAQPKTIMSAYNLVNGTYANENAHLLMDILRR
                     DWGFDGAVVTDWGGSNDHALGVKNGSTLEMPAPGGDAIRELMKAVQTGKITEADVDAR
                     LEELLELVFTTKAAVDAAPGKFDADAHHALARRAAAQSIVLLKNENSLLPLAKGEKVA
                     VIGDFAQTPRYQGAGSSAVNSIKVDSFLDCLAESGLNSVGYAKGFDRQGKPDEALKAE
                     AVLLAKNADVVLLCMGLDEIKESEGIDRADMKLAENQLELLAAVAAANPNVVVLLSAG
                     SSLESDWVKDCKALVYGCLGGQAGAGALVEVLTGAQNPCGKLAETWARSYADTPAKAH
                     FGGDGPTVEYREGLYVGYRYYDTAGVPTAFPFGYGLSYTSFAYSDLKADETGVTLTVT
                     NTGSCAGAEVVQLYVAKPDAAVFRPVKELKGFTKVQLEAGESKNVTIPLDDKAFRYWN
                     VKTDRWEVEGGSYQLLVGASSADIRLTAAVTVAGTGAPDPYAGKNLEHYRTAQVQNVP
                     DAEFEALLGRPIPENKVHIDRNMTLGEMGHGRSPIGWLAAAVLGTLLRRSIKKGKPDL
                     NILFQYNMPLRALAKMTNGAISMGMVDGIVMELQGFWIIGLVRVIVEAVKNLVLNSRM
                     EERLKNS"
ORIGIN      
        1 atggcacaga aaaagaagga cagtaagatg atgggcaaga tcatcaaaac tgccgtttcg
       61 ggtgtgttgt gtgtcgcatt ggcgggcggt atagttgcgg ccaatgtgct gatcccgccc
      121 aacgccagca gcgtgcagag cattttgggc ctgaagagcg gcggcatcga caacagcaag
      181 gcaaagaccg aaggcattaa tatggaatac ggcaagcccg gctttgacac agaggatgcg
      241 ctggttgagg atgagatcgc cctgaacaag cagatcgcag cagagggcat cgtcctgctg
      301 aagaacgatg aaggcagaat gccgtacagc acggatacca ccttcagttt tgtcagccat
      361 tcggcagtca gctacatcgg cggcaacaaa gtcgatatga aaacggcctt tgaagatgcc
      421 gggttcggtg tcaacgagga cctctggaaa ttctattccg aaggcaacgg caaggattac
      481 ggtctgggcg ttggttccgt ttcctacggt gatgacgagg acttttccat caacgaatgc
      541 cccttgtctg ttatgaaagc agagccgggt ctgaccgatt ccatgaagaa tacggttcct
      601 gtttttgtgt tcagccgtgt ggcgggcgaa ggccgtgata tgccccgctc catgtacaac
      661 cacaccgatg tggaagagga caagaccaag acttatctgg agccggattc tacggaactg
      721 gaaatcctgc agtatctgaa cgacaacttt gacgatgtgg tgctgctgct gaactccagc
      781 gcagcggtag atctgagctg ggtcgaaaac tatcccaata tccacaccgt catttcggct
      841 cccgctatgg gtgattacgg tctgtgctct ctggcagaaa tcttctccgg taaggtgaac
      901 ccctccggcc gcaccgtgga tacctatgaa gtggatgcca tgaacagccc ggcggcgcag
      961 aacttcggcg actttgccta ctacgatgag aatggcaacc tcaccaagta caactacgtc
     1021 agctacaaag agggcatcta tgttggctac cgctactacg agactcgcta cgaggataag
     1081 gtgctgggtc agggcaatgc cggtgattac aactatgcgg atgctgtgat gtatcccttt
     1141 ggatacggcc tgtcctacac ggattttgag tggtctgatt atgataccag ctgggatggc
     1201 gatacctgca ccgtgacggt caaggtcacc aatacgggtg atgtggccgg caaggatgtc
     1261 gtacaggtct atgcacagag cccctatacc gattacgaca aggcaaacaa ggtggaaaag
     1321 gctgctgtgg agctggtggg ctatgccaaa actgcagagc tggctcccgg cgcaagcgag
     1381 acggtgaaga tcacctttga tcaggagcag ctgaagtctt acgactacgt caatgctaag
     1441 acctacattc tggacgcagg tgattactat atcactgcgg ctaaaaacgc acacgaagcg
     1501 gtcaacaaca tcctctctgc caagggcaag actgtggaag atggcatgac cgccgacggc
     1561 gacactgctt ttgttgcaac ctacaccccg gcaaacggca ccgtggatac cacgacctac
     1621 aagctcgaca ccacgaccgg tgtggagatc accaatcagc tcgaccatgc aaacggcggg
     1681 ctgcagtatc tctcccgcag tgactggact ggcacctggc cgaccgttga cggcgaggtc
     1741 agcgaccaga tcagcacctg gggcaacccc atcaatggca ccgatgccag cggcaaggct
     1801 gcatcctata cctaccgcaa gacgatcagc aaggaggacc ttgcaaagct ggattctttt
     1861 gattccctga accccaccga cttctccacc ctgaccgatg agatcgttta cggcaaggac
     1921 aacggtctgg gtctgatcga tatgcgtggt ctggattaca acgaccccaa gtggaacgac
     1981 ctgctcgacc agctgacccc cagtgattat cagaccctga tcacgcagtc cggctatggc
     2041 acggctgcca tcaagtcggt ggataagccc tccacgaccg accgcgactc tgccaccggc
     2101 ctgatcaact acggctttga tgcaagcggc aacctctact tcaagggcaa catcacgcac
     2161 tgcggcgtga tcgttctggc acagacctac aacgatgatc tggcctacca ttatggcgaa
     2221 aacatcggcg atgaatctta ctatctgggc gttgatggct ggtatgcacc tgctgtcaat
     2281 atgcaccgca ctgcattctc cggccgtaac agcgagtatt actccgagga tccgttcatc
     2341 ggcggtcaca ttgcttccct cgagtgtgag ggtgtcgcct cccgcggtat gtatgtcttt
     2401 gtcaagcatt acgccatcaa cgatcaggag gaccaccgcg gcgaccgtga aggccagtac
     2461 agcattgcga ccttcctgaa cgagcaggcg gcccgcgaga tctacctcaa gccctttgag
     2521 atgtgcgtca agtctgataa ggtcgagatg aactatgcaa aggacaacgg cgacggcact
     2581 tacagcaatg ccaccaccga gatcccgtcc gtcaccggca tcatgacctc cttcaaccgc
     2641 gttggctata cctgggccgg cggcaactac aacatgatca ccggcctgct gcgcaacgag
     2701 tggggcttcc acggctttat catcaccgac aacgcaaaca ccggtgtctt tatggacgct
     2761 ggccagatga tccaggccgg tgcagacggc aagctgacga acctgcccac cggcgcacgg
     2821 tacaccttta acaaggatga cgttgcagat taccactacg gtcgtgaagc aatccataac
     2881 atcctgtaca ccattgcaaa ctccaaggca atgaacggcg gtatgccggg cagccgttat
     2941 ctggcaaagg tcgagcctta ccagaaggtc atctacgcag tggatggtgt ctgcggcggt
     3001 ctgatcgcag ttctggtcgt tctgacgatc ctccgcttcc gtaaaaagaa agaggacgta
     3061 aaaaccgtct gatcaacaca taggaacaga aggggcggcg ggcaaacgcc cgcccccttt
     3121 ttttgattgt caggagagac ccatgaaaca cacagatatc atcaagagct tgtctctgga
     3181 acaaaaatgc gccctgctga gcggcggtac ggtgttcacc acccgggcgc tgccgggcaa
     3241 gggcatcccg gccattaccc tgtcggacgg ccccaacggc gtgcgcaagc aggcgggcgc
     3301 agctgaccat ctgggcctga accccagtgt gcccgccacc tgcttcccca cctcggccac
     3361 cgtggccaac agctgggacc cggagcttgg cgaggctgtg ggcgcagcca tgggcgaaga
     3421 agcagcggca cagggcgtgt cggtgctgct gggccccggc ctgaacatca agcgcagccc
     3481 gctgtgcggc cgcaacttcg agtatttctc ggaggatccc taccttgccg gtaagatggc
     3541 ggcggcctac gtccgcggca tccagaaaaa cggcattgcc gcctgcccca agcactttgc
     3601 cgtgaacagt caggagctgc gccgcatggc ctcggattcc attgtggacg agcgcaccct
     3661 gcgggagatc tacctgacca gcttcgagat ggtggtcaag gaggcgcagc ccaagaccat
     3721 catgtccgcc tataaccttg tcaacggtac ctacgccaac gagaacgccc acctgctcat
     3781 ggatatcctg cgcagggact ggggctttga cggcgcggtg gtcaccgact ggggcggcag
     3841 caacgaccac gccctcggcg taaagaacgg ctctacgctg gaaatgcccg cccccggcgg
     3901 ggacgccatc cgggaactga tgaaggcggt gcagaccggc aagatcaccg aagcggacgt
     3961 ggacgcccgg ctggaggaac tgctggagct ggtgttcacc accaaagcag cggtggacgc
     4021 cgcacccggc aagttcgatg ccgacgccca ccacgcactg gcacgccggg ctgctgccca
     4081 gagcatcgtg ctgctgaaga acgaaaacag cctgctgccc cttgcaaaag gggaaaaggt
     4141 ggcggtcatc ggcgactttg cccagacgcc ccgctatcag ggtgcaggct ccagcgccgt
     4201 caactccatc aaggtggatt cctttctgga ctgccttgcc gaaagcggcc tgaacagcgt
     4261 cggctacgcc aagggctttg accggcaggg caagcccgat gaggcactga aagccgaggc
     4321 ggtgctgctg gcaaagaacg ctgatgtggt gctgctgtgc atgggtctgg acgagatcaa
     4381 ggagagcgag ggcatcgacc gcgccgacat gaagctggca gaaaaccagc tggaactgct
     4441 ggcggctgtg gcggcggcaa accccaacgt ggtggtgctg ctgagtgcag gctcctcgct
     4501 ggaaagcgat tgggtcaagg actgcaaggc gctggtctac ggctgcttgg gcggtcaggc
     4561 cggtgcgggc gcactggtcg aggtgctcac cggcgcgcag aacccctgcg gtaagctggc
     4621 tgagacttgg gcgcgcagct acgccgacac ccccgcaaaa gcgcatttcg gcggcgacgg
     4681 ccccactgtg gagtaccgcg agggtctgta tgtgggctac cgctactacg acaccgccgg
     4741 tgtgcccacc gccttcccct tcggctacgg cctgagctac accagctttg cgtacagtga
     4801 cctgaaagca gacgaaaccg gcgtgaccct gactgtcacc aacaccggca gctgtgcagg
     4861 tgccgaggtg gtgcagctgt atgtggcaaa gccggatgca gcggttttcc gccccgtcaa
     4921 ggagctgaag ggctttacca aggtgcagct ggaagccgga gagagcaaga acgtcaccat
     4981 cccgctggac gacaaggcgt tccgctactg gaacgtcaag accgaccgct gggaggtgga
     5041 gggcggcagc tatcagctgc tggtgggcgc ttccagcgcc gatatccgtc tgactgctgc
     5101 cgtcacggtg gcgggcaccg gcgcacccga cccctatgcg ggcaaaaatc tggagcatta
     5161 ccgcactgcg caggtgcaga acgtgccgga cgcggaattt gaggcgctgc tgggccgtcc
     5221 catcccggag aacaaggtgc acatcgaccg caacatgacg ctgggcgaga tggggcacgg
     5281 acgcagcccc atcggctggc tggcggctgc cgtgctgggc accctgctgc gccgcagcat
     5341 caaaaagggc aagcccgacc tgaacatcct gttccagtac aatatgcctc tgcgtgcgct
     5401 ggccaaaatg accaacggcg ctatcagcat gggcatggtg gacggcatcg tgatggagct
     5461 gcagggcttc tggatcatcg gtcttgtgcg ggtgatcgtg gaggccgtga agaacctcgt
     5521 gctgaacagc cgcatggaag agcgcttgaa aaacagctga
//
