Basic Information | |
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Species | Selaginella moellendorffii |
Cazyme ID | 111304 |
Family | CBM22 |
Protein Properties | Length: 876 Molecular Weight: 96842.9 Isoelectric Point: 6.6903 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 6 | 140 | 2.5e-26 |
IIINGNFDSGLEGWRASYGCKVSLCDPNALQGIQPRGGEFVAVVSGRTQGWQGIEQDISERVKPGIKYEVLAFVSVAGVSEADVLATAKLEKKDSDTKYM QLGRARASRGTWTRIQGPLLLNESFDKVLVYLEGP | |||
CBM22 | 171 | 301 | 1e-27 |
VIKNACFSRGLQGWSARSCTLTLDDPHVSPCTGDHFAIASNRTQTWHGIEQDVTGRLSANIMYDVRATVRIRGGLSRAEVLATLYIQKSNMQEQYMTIGR TTASAESWSSLQGCFTIHSMPKRAVIFLEGP | |||
CBM22 | 336 | 477 | 8.9e-32 |
NIVENSDLHKGLSSWFSMGSCSLRVATGAPKILPPSAKLSLEFHPEFSGNYIVATNRKFGWEGPAQKLTERIQLFLPYQVCAWVRIGGSSQSLARVNVAL SVDGQWMSGGEVDASPSSWTEVAGSFRLEKKPSEVMVYVQGP | |||
GH10 | 535 | 794 | 0 |
SSSFALGACINRINLENTKYVDYFLKTFNYTVFENEMKWGWTEPEQGKLNFREADELCKFCADHKLPVRGHCVFWEVEHCVQGWLKKLSKEKLQAAVESR IEKLVSRYRGKFQHYDVNNEMLHGDFYKSRLGDEVHANMFKQIHRLDPLARLFVNDYHVEDGREANSSARRYVQQIDSLIAQGAPVGGIGVQGHVDVPVG PILRGSLDELAMLGLPIWLTEVDVCSSNEHVRADDLEAVLREAFAHPAVEGVVLWGFWQG |
Full Sequence |
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Protein Sequence Length: 876 Download |
MRDEDIIING NFDSGLEGWR ASYGCKVSLC DPNALQGIQP RGGEFVAVVS GRTQGWQGIE 60 QDISERVKPG IKYEVLAFVS VAGVSEADVL ATAKLEKKDS DTKYMQLGRA RASRGTWTRI 120 QGPLLLNESF DKVLVYLEGP PAGIDILVDS VSITTQSSGI DVPDTSPSDS VIKNACFSRG 180 LQGWSARSCT LTLDDPHVSP CTGDHFAIAS NRTQTWHGIE QDVTGRLSAN IMYDVRATVR 240 IRGGLSRAEV LATLYIQKSN MQEQYMTIGR TTASAESWSS LQGCFTIHSM PKRAVIFLEG 300 PAPGVDILVD SFSVCPAKKP EPSPPPSFQN PMFGINIVEN SDLHKGLSSW FSMGSCSLRV 360 ATGAPKILPP SAKLSLEFHP EFSGNYIVAT NRKFGWEGPA QKLTERIQLF LPYQVCAWVR 420 IGGSSQSLAR VNVALSVDGQ WMSGGEVDAS PSSWTEVAGS FRLEKKPSEV MVYVQGPDAG 480 VDIMVANLRI FSVNRSDQYA ALKKQADQVR KRDVVLRIKS DKSGTPLRLQ VKQISSSFAL 540 GACINRINLE NTKYVDYFLK TFNYTVFENE MKWGWTEPEQ GKLNFREADE LCKFCADHKL 600 PVRGHCVFWE VEHCVQGWLK KLSKEKLQAA VESRIEKLVS RYRGKFQHYD VNNEMLHGDF 660 YKSRLGDEVH ANMFKQIHRL DPLARLFVND YHVEDGREAN SSARRYVQQI DSLIAQGAPV 720 GGIGVQGHVD VPVGPILRGS LDELAMLGLP IWLTEVDVCS SNEHVRADDL EAVLREAFAH 780 PAVEGVVLWG FWQGCCRSDG HLVEVDGTLN EAGKRLEALR GEWRTELSGS TDKEGKFAFR 840 GYFGSYKALV EKSGGKKVEV SFDVSQDTNT IELRL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 4.0e-14 | 171 | 303 | 136 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 6.0e-17 | 5 | 142 | 139 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 3.0e-38 | 557 | 794 | 260 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-66 | 534 | 794 | 279 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 5.0e-69 | 571 | 794 | 242 | + Glycosyl hydrolase family 10. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001770128.1 | 6e-36 | 4 | 314 | 156 | 482 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001770128.1 | 0 | 33 | 875 | 6 | 871 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002283550.1 | 5.00264e-43 | 3 | 319 | 265 | 597 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002283550.1 | 0 | 5 | 864 | 94 | 968 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002283550.1 | 8.00141e-43 | 166 | 490 | 90 | 416 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1vbu_B | 2e-26 | 527 | 791 | 6 | 283 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
PDB | 1vbu_A | 2e-26 | 527 | 791 | 6 | 283 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
PDB | 1vbr_B | 2e-26 | 527 | 791 | 6 | 283 | A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga Maritima With Xylobiose |
PDB | 1vbr_A | 2e-26 | 527 | 791 | 6 | 283 | A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga Maritima With Xylobiose |
PDB | 3nj3_B | 3e-26 | 516 | 791 | 11 | 299 | A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga Maritima With Xylobiose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE491934 | 268 | 357 | 624 | 0 |
FE502055 | 233 | 644 | 876 | 0 |
FE502054 | 233 | 644 | 876 | 0 |
FE502054 | 233 | 644 | 876 | 0 |
FE502055 | 233 | 644 | 876 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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