| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 60629.m00002 |
| Family | CBM13 |
| Protein Properties | Length: 576 Molecular Weight: 64090.6 Isoelectric Point: 6.7522 |
| Chromosome | Chromosome/Scaffold: 60629 Start: 4119 End: 6005 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM13 | 326 | 451 | 3.9e-22 |
| RIVGRNGLCVDVRDGRFHNGNAIQLWPCKSNTDANQLWTLKRDNTIRSNGKCLTTYGYSPGVYVMIYDCNTAATDATRWQIWDNGTIINPRSSLVLAATS GNSGTTLTVQTNIYAVSQGWLPTNNT | |||
| CBM13 | 462 | 572 | 2.7e-23 |
| YGLCLQANSGQVWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLTSDSNIRETVVKILSCGPASSGQRWMFKNDGTILNLYSGLVLDVRASDPSLKQIIL YPLHGDPNQIW | |||
| Full Sequence |
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| Protein Sequence Length: 576 Download |
| MKPGGNTIVI WMYAVATWLC FGSTSGWSFT LEDNNIFPKQ YPIINFTTAG ATVQSYTNFI 60 RAVRGRLTTG ADVRHEIPVL PNRVGLPINQ RFILVELSNH AELSVTLALD VTNAYVVGYR 120 AGNSAYFFHP DNQEDAEAIT HLFTDVQNRY TFAFGGNYDR LEQLAGNLRE NIELGNGPLE 180 EAISALYYYS TGGTQLPTLA RSFIICIQMI SEAARFQYIE GEMRTRIRYN RRSAPDPSVI 240 TLENSWGRLS TAIQESNQGA FASPIQLQRR NGSKFSVYDV SILIPIIALM VYRCAPPPSS 300 QFSLLIRPVV PNFNADVCMD PEPIVRIVGR NGLCVDVRDG RFHNGNAIQL WPCKSNTDAN 360 QLWTLKRDNT IRSNGKCLTT YGYSPGVYVM IYDCNTAATD ATRWQIWDNG TIINPRSSLV 420 LAATSGNSGT TLTVQTNIYA VSQGWLPTNN TQPFVTTIVG LYGLCLQANS GQVWIEDCSS 480 EKAEQQWALY ADGSIRPQQN RDNCLTSDSN IRETVVKILS CGPASSGQRW MFKNDGTILN 540 LYSGLVLDVR ASDPSLKQII LYPLHGDPNQ IWLPLF |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00161 | RICIN | 1.0e-6 | 493 | 572 | 81 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| cd00161 | RICIN | 1.0e-27 | 324 | 446 | 126 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00652 | Ricin_B_lectin | 7.0e-29 | 323 | 445 | 126 | + Ricin-type beta-trefoil lectin domain. | ||
| cd00161 | RICIN | 2.0e-29 | 457 | 573 | 121 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00161 | RIP | 1.0e-76 | 45 | 256 | 213 | + Ribosome inactivating protein. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0017148 | negative regulation of translation |
| GO:0030598 | rRNA N-glycosylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB22582.1 | 0 | 36 | 576 | 1 | 541 | proricin A chain [Ricinus communis] |
| EMBL | CAA26230.1 | 0 | 12 | 576 | 1 | 565 | unnamed protein product [Ricinus communis] |
| Swiss-Prot | P06750 | 0 | 12 | 576 | 1 | 564 | AGGL_RICCO RecName: Full=Agglutinin; AltName: Full=RCA; Contains: RecName: Full=Agglutinin A chain; AltName: Full=rRNA N-glycosidase; Contains: RecName: Full=Agglutinin B chain; Flags: Precursor |
| RefSeq | XP_002534220.1 | 0 | 1 | 576 | 1 | 575 | Agglutinin precursor [Ricinus communis] |
| RefSeq | XP_002534649.1 | 0 | 1 | 576 | 1 | 576 | Ricin precursor [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vlc_B | 0 | 41 | 576 | 23 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 2vlc_A | 0 | 41 | 576 | 23 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 4hv7_X | 0 | 36 | 302 | 1 | 267 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 4hup_X | 0 | 36 | 302 | 1 | 267 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 4huo_X | 0 | 36 | 302 | 1 | 267 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| Transmembrane Domains | ||||
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| Start | End | |||
| 7 | 29 | |||
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 26 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EV523936 | 289 | 1 | 289 | 0 |
| EV523856 | 275 | 1 | 275 | 0 |
| EV523326 | 274 | 1 | 274 | 0 |
| EV523792 | 273 | 1 | 273 | 0 |
| EV523718 | 272 | 1 | 272 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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