| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | AC235662_2.1 |
| Family | AA7 |
| Protein Properties | Length: 544 Molecular Weight: 61226.4 Isoelectric Point: 8.2801 |
| Chromosome | Chromosome/Scaffold: 2356628 Start: 4208 End: 6079 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA7 | 69 | 293 | 0 |
| NLRFATNETPKPLVIITPTQISHIQTAIICSQHHGMQIRIRSGGHDFEGLSFVSNVPFVIIDLTNFRGIDVDVENRTAWVQSGATLGELYYKIAQKSKTL GFPGGVCPTVGVGGHFSGGGYGTLLRKYGLAADNVIDAHIIDVKGRFLDREAMGEDLFWAIRGGGGASFGVIVSWKIKLVQVPSTVTVFTVPRTLEQNAT KLVHKWQFVAHKLEENLAINIILQR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 544 Download |
| MMPLRLYLTI VLIAIAFSFT SFAIDTSPHE DNFLQCLYSY SHNITSISKV VYTKTNSSYS 60 SILKFSIQNL RFATNETPKP LVIITPTQIS HIQTAIICSQ HHGMQIRIRS GGHDFEGLSF 120 VSNVPFVIID LTNFRGIDVD VENRTAWVQS GATLGELYYK IAQKSKTLGF PGGVCPTVGV 180 GGHFSGGGYG TLLRKYGLAA DNVIDAHIID VKGRFLDREA MGEDLFWAIR GGGGASFGVI 240 VSWKIKLVQV PSTVTVFTVP RTLEQNATKL VHKWQFVAHK LEENLAINII LQRLDLNSSK 300 QGEPKSTVLA LFQSLFLGSV DNLLPLMEEK FPELGLVRED CVEMSWIESV LYLFRFPEGE 360 PLETLLNRTL AAKDNSKAKS DFVKIPIPET GLEGLWPLFD EDGAEDVLMV LFPYGGIMDK 420 ISESEIPFPH RYGTLYKIQY AVHWHQEGDE VEKLHINWIR KLYSYMEPFV SKSPRAAYIN 480 YRDLDIGVNN INGYTSYKQA SIWGVKYFKN NFKRLAKVKT KVDPLNFFRN EQSIPSHVSK 540 GRK* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR01679 | bact_FAD_ox | 0.004 | 76 | 274 | 202 | + FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. | ||
| pfam08031 | BBE | 8.0e-19 | 477 | 535 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| pfam01565 | FAD_binding_4 | 2.0e-19 | 80 | 217 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| COG0277 | GlcD | 1.0e-19 | 80 | 536 | 476 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB33033.1 | 0 | 1 | 536 | 1 | 531 | CPRD2 [Vigna unguiculata] |
| RefSeq | XP_002299045.1 | 0 | 1 | 536 | 1 | 529 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330608.1 | 0 | 29 | 535 | 30 | 531 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002332196.1 | 0 | 26 | 535 | 16 | 522 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333020.1 | 0 | 12 | 535 | 12 | 528 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 30 | 535 | 4 | 511 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 30 | 535 | 10 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 30 | 535 | 10 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 30 | 540 | 8 | 499 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 30 | 540 | 8 | 499 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
