| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007190 |
| Family | GH17 |
| Protein Properties | Length: 378 Molecular Weight: 41771.6 Isoelectric Point: 7.6516 |
| Chromosome | Chromosome/Scaffold: 09 Start: 27871094 End: 27872227 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH17 | 42 | 350 | 0 |
| ATLSPDRIAAQVVSMKIPAVRLLDSNPSMIRAFAYTNVSVFLSVPNPLVPLLASNRSLAMRWCYRHVLPFYPRTKITIISVGNDVVSYSPDVSPFLLRAM QNVHLSLADLRIYKISVSTTFSFFNVVPTAFPPSSAQFQEPTGEVIIRPILQFLERTNSSFLINLFPYNMYRSSFSIPIGFALFEEGPFNFRDDLTTGVR YRNLFDMMVDAVISSMAVMGHENLPVIVAETGWPSSGIDAGEVDATLLYSEMFLKALLAHLRSGGGTPLRKEGVAEVYVFELVEKEAKQGVRNWGLLHHN MTSKYSFEF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 378 Download |
| MNSVAFYLLL LLLISVATPP STTATTIGVT YSTPPSISPS SATLSPDRIA AQVVSMKIPA 60 VRLLDSNPSM IRAFAYTNVS VFLSVPNPLV PLLASNRSLA MRWCYRHVLP FYPRTKITII 120 SVGNDVVSYS PDVSPFLLRA MQNVHLSLAD LRIYKISVST TFSFFNVVPT AFPPSSAQFQ 180 EPTGEVIIRP ILQFLERTNS SFLINLFPYN MYRSSFSIPI GFALFEEGPF NFRDDLTTGV 240 RYRNLFDMMV DAVISSMAVM GHENLPVIVA ETGWPSSGID AGEVDATLLY SEMFLKALLA 300 HLRSGGGTPL RKEGVAEVYV FELVEKEAKQ GVRNWGLLHH NMTSKYSFEF SDGGKGRRFV 360 EVLVGFFVEV VMLCLLM* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0001 | 264 | 322 | 59 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-57 | 50 | 350 | 310 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN71832.1 | 0 | 27 | 320 | 32 | 323 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_191137.1 | 0 | 27 | 373 | 31 | 376 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002276218.1 | 0 | 27 | 377 | 32 | 384 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316237.1 | 0 | 47 | 356 | 62 | 370 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530412.1 | 0 | 17 | 365 | 24 | 371 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 3e-39 | 46 | 350 | 15 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghr_A | 2e-34 | 27 | 350 | 1 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1aq0_B | 2e-34 | 27 | 350 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 2e-34 | 27 | 350 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3ur8_B | 4e-34 | 58 | 351 | 29 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
