| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra008715 |
| Family | AA2 |
| Protein Properties | Length: 414 Molecular Weight: 45407.9 Isoelectric Point: 9.3838 |
| Chromosome | Chromosome/Scaffold: 10 Start: 13519569 End: 13522662 |
| Description | Peroxidase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA2 | 55 | 196 | 1.6e-39 |
| AIKKDRTIGAPLLRMFFHDCFVRGCEGSVLLELKNKKDEKNAPPNLSLRGFEIIDNVKEAVEKECPGVVSCSDVLALVARDAVVALNGPSWGVETGRRDG RVTNINEARANLPSPFDNITSLITQFRSKGLDKKDLVVLSGP | |||
| Full Sequence |
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| Protein Sequence Length: 414 Download |
| MAALQMNISC LIFLQVLLLL LSLFAQTNAQ GLKVGFYDNT CPKAEGIVKK SVLDAIKKDR 60 TIGAPLLRMF FHDCFVRGCE GSVLLELKNK KDEKNAPPNL SLRGFEIIDN VKEAVEKECP 120 GVVSCSDVLA LVARDAVVAL NGPSWGVETG RRDGRVTNIN EARANLPSPF DNITSLITQF 180 RSKGLDKKDL VVLSGPDSYV ARVWVTKLYA AEATCGGNEE RGGAEAGLIG VNGLRSKADR 240 RRDGVKRKAQ PHCTSWFLNW ASDQMWNPTD TGRHLGSRGG HTVGNGHCPL ITNRLYNFTG 300 KGDSDPNLDT EYAANLRGRC KPTDTTTALE MDPGSFKTFD ESYFKLVSQR RGFFQSDAAL 360 LDNQETKSYV LKQTKSYGST FFKDFGVSMV KMGRIGVLTG RAGEVRKKCR MVN* 420 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03030 | PLN03030 | 2.0e-43 | 30 | 195 | 166 | + cationic peroxidase; Provisional | ||
| pfam00141 | peroxidase | 1.0e-46 | 48 | 195 | 149 | + Peroxidase. | ||
| cd00693 | secretory_peroxidase | 6.0e-55 | 279 | 412 | 135 | + Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. | ||
| cd00693 | secretory_peroxidase | 1.0e-75 | 31 | 195 | 166 | + Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004601 | peroxidase activity |
| GO:0006979 | response to oxidative stress |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93506.1 | 0 | 13 | 413 | 7 | 324 | unknown [Populus trichocarpa] |
| EMBL | CAA67337.1 | 0 | 16 | 413 | 9 | 326 | peroxidase; peroxidase ATP19a [Arabidopsis thaliana] |
| RefSeq | NP_197022.1 | 0 | 1 | 195 | 1 | 195 | peroxidase, putative [Arabidopsis thaliana] |
| RefSeq | NP_197022.1 | 0 | 279 | 413 | 195 | 329 | peroxidase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002280274.1 | 0 | 32 | 413 | 25 | 325 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1sch_B | 0 | 32 | 195 | 2 | 167 | A Chain A, Peanut Peroxidase |
| PDB | 1sch_B | 4e-16 | 279 | 413 | 167 | 294 | A Chain A, Peanut Peroxidase |
| PDB | 1sch_A | 0 | 32 | 195 | 2 | 167 | A Chain A, Peanut Peroxidase |
| PDB | 1sch_A | 4e-16 | 279 | 413 | 167 | 294 | A Chain A, Peanut Peroxidase |
| PDB | 1qo4_A | 0 | 32 | 199 | 3 | 172 | A Chain A, Peanut Peroxidase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| betanidin degradation | RXN-8635 | EC-1.11.1.7 | peroxidase |
| Transmembrane Domains | ||||
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| Start | End | |||
| 7 | 29 | |||
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 29 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EV222811 | 195 | 1 | 195 | 0 |
| ES904506 | 189 | 7 | 195 | 0 |
| ES904506 | 83 | 279 | 361 | 0 |
| EV222678 | 136 | 279 | 414 | 0 |
| EV222811 | 27 | 279 | 305 | 0.000000006 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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