| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra020132 |
| Family | CBM43 |
| Protein Properties | Length: 497 Molecular Weight: 53715 Isoelectric Point: 7.9924 |
| Chromosome | Chromosome/Scaffold: 02 Start: 5190879 End: 5192501 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 372 | 452 | 4.1e-23 |
| WCVLSPQAAAGNNGGASADYACQLADCTSLGPGSSCAALDPAANASYAFNMYFQKMDHRRGSCVFDNLGFVTKIDPSRGSC | |||
| GH17 | 27 | 352 | 0 |
| ACNWGTQASHPIPPNIVVKLLRDNGFNKVKLFEADPGALRALGKSGIQVMVGIPNDLLATMASTVTAAELWVQQNVSQYISKYGTDIRHVAVGNEPFLKT YKDRFVHSTYPALQNVQAALVKAGLGRQVKVTVPLNADVYESGDGLPSSGDFRSDIKTLMVSIVRFLADSVSPITFNIYPFLSLNADPNFPREYAFFPGG GSAAGGAKPVVDGSISYTNVFDANFDTLVSALEKNGFDANKVEIIVGEVGWPTDGDVNATPAMAQRFNQGLLNRIVKGQGTPRRKTAPEVYIFSLVDEDV KSVDPGKFERHWGIFSYDGTVKYPLS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 497 Download |
| MGRHDTYFFC LSILLLHNTL TNVDALACNW GTQASHPIPP NIVVKLLRDN GFNKVKLFEA 60 DPGALRALGK SGIQVMVGIP NDLLATMAST VTAAELWVQQ NVSQYISKYG TDIRHVAVGN 120 EPFLKTYKDR FVHSTYPALQ NVQAALVKAG LGRQVKVTVP LNADVYESGD GLPSSGDFRS 180 DIKTLMVSIV RFLADSVSPI TFNIYPFLSL NADPNFPREY AFFPGGGSAA GGAKPVVDGS 240 ISYTNVFDAN FDTLVSALEK NGFDANKVEI IVGEVGWPTD GDVNATPAMA QRFNQGLLNR 300 IVKGQGTPRR KTAPEVYIFS LVDEDVKSVD PGKFERHWGI FSYDGTVKYP LSLGNGRQLV 360 PAKGVRYQAR EWCVLSPQAA AGNNGGASAD YACQLADCTS LGPGSSCAAL DPAANASYAF 420 NMYFQKMDHR RGSCVFDNLG FVTKIDPSRG SCRFPIEIDT SRHETLRPPP RSSGATEMKW 480 RTVAAAAMAV GWAVFN* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 1.0e-6 | 267 | 344 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 7.0e-11 | 372 | 440 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 7.0e-24 | 372 | 454 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-70 | 26 | 352 | 329 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI27737.1 | 0 | 25 | 490 | 24 | 482 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_197587.1 | 0 | 1 | 490 | 1 | 495 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277217.1 | 0 | 27 | 490 | 18 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309443.1 | 0 | 26 | 456 | 2 | 425 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516181.1 | 0 | 8 | 484 | 24 | 489 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 30 | 353 | 5 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1aq0_B | 0 | 30 | 353 | 5 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 30 | 353 | 5 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 2cyg_A | 2e-40 | 30 | 353 | 5 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 3e-40 | 30 | 353 | 6 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
