| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra022552 |
| Family | CE8 |
| Protein Properties | Length: 184 Molecular Weight: 20516.6 Isoelectric Point: 10.6585 |
| Chromosome | Chromosome/Scaffold: 02 Start: 9048910 End: 9049461 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 2 | 167 | 0 |
| VHSQRQFYRGCYIYGTVDFIFGNAAVVFQNCLILPRRPLKGQANVITAQGRADPFQNTGISIHNSRIQPAPDLKPVIRTVKTYMGRPWMKYSRTVVLKTH LDSAVSPLGWSPWTEGSVFGLDTLFYAEYKNTGPGSSTKWRVRWKGFHVLNRDSDASAFTVGRFIA | |||
| Full Sequence |
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| Protein Sequence Length: 184 Download |
| MVHSQRQFYR GCYIYGTVDF IFGNAAVVFQ NCLILPRRPL KGQANVITAQ GRADPFQNTG 60 ISIHNSRIQP APDLKPVIRT VKTYMGRPWM KYSRTVVLKT HLDSAVSPLG WSPWTEGSVF 120 GLDTLFYAEY KNTGPGSSTK WRVRWKGFHV LNRDSDASAF TVGRFIAGTV WLPQTGVPFT 180 SGL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02468 | PLN02468 | 9.0e-83 | 2 | 183 | 182 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-83 | 3 | 183 | 181 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 6.0e-93 | 3 | 183 | 181 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 1.0e-97 | 2 | 168 | 167 | + Pectinesterase. | ||
| PLN02995 | PLN02995 | 4.0e-127 | 1 | 183 | 183 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI24581.1 | 0 | 1 | 183 | 74 | 255 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_190324.1 | 0 | 2 | 183 | 413 | 594 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_199962.1 | 0 | 1 | 183 | 354 | 536 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_199963.1 | 0 | 1 | 183 | 358 | 540 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002510939.1 | 0 | 1 | 183 | 345 | 526 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 2 | 183 | 140 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 3 | 183 | 137 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2nt9_B | 0.000000009 | 2 | 138 | 158 | 312 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2nt9_A | 0.000000009 | 2 | 138 | 158 | 312 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2nt6_B | 0.000000009 | 2 | 138 | 158 | 312 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Transmembrane Domains | ||||
|---|---|---|---|---|
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| Start | End | |||
| 12 | 34 | |||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CD829932 | 183 | 2 | 184 | 0 |
| CV273451 | 184 | 1 | 184 | 0 |
| GT128444 | 184 | 1 | 184 | 0 |
| CX711539 | 182 | 1 | 182 | 0 |
| GO038922 | 184 | 1 | 184 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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