| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028343 |
| Family | CBM43 |
| Protein Properties | Length: 477 Molecular Weight: 52447.5 Isoelectric Point: 7.7656 |
| Chromosome | Chromosome/Scaffold: 01 Start: 18384098 End: 18385721 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 387 | 470 | 2.8e-27 |
| WCVAVEGANETELGQALDFACGRSNATCAALAPGRECYAPVSVTWHASYAFSSYWAQFRNQSSQCYFNGLARETTTNPGNEQCK | |||
| GH17 | 37 | 360 | 0 |
| IGINYGRLGNNLPSPYQSINLVKSIKAGHVKLYDADQETLMLLSQTNLYVTIMVPNNQIISIGADQAAADNWVNTNVLPHYPQTRIRFVLVGNEILSYNS DQDKQIWANLVPAMRKIVNSLRARGIHNIKVGTPLAMDVLRSSFPPSNGTFREEVAAPVMLPLLKFLNGTNSFFFLDVYPYFPWSTDPVNNHLDFALFES NSTYTDPQTGLVYTNLLDQMLDSVIFAMTKLGYPNVRLAISETGWPNSGDIDETGANIFNAATYNRNLIKKMTANPPLGTPARRGSPIPTFLFSLFNENR KPGSGTERHWGILNPDGTQIYDID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 477 Download |
| MAFFALFIFT LVALSSSCSY AIGPQNNKTL LSLASRIGIN YGRLGNNLPS PYQSINLVKS 60 IKAGHVKLYD ADQETLMLLS QTNLYVTIMV PNNQIISIGA DQAAADNWVN TNVLPHYPQT 120 RIRFVLVGNE ILSYNSDQDK QIWANLVPAM RKIVNSLRAR GIHNIKVGTP LAMDVLRSSF 180 PPSNGTFREE VAAPVMLPLL KFLNGTNSFF FLDVYPYFPW STDPVNNHLD FALFESNSTY 240 TDPQTGLVYT NLLDQMLDSV IFAMTKLGYP NVRLAISETG WPNSGDIDET GANIFNAATY 300 NRNLIKKMTA NPPLGTPARR GSPIPTFLFS LFNENRKPGS GTERHWGILN PDGTQIYDID 360 LSGTRPVSSL GSLPKPNNNV PFKGNVWCVA VEGANETELG QALDFACGRS NATCAALAPG 420 RECYAPVSVT WHASYAFSSY WAQFRNQSSQ CYFNGLARET TTNPGNEQCK FPSVTL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0001 | 271 | 352 | 85 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 4.0e-18 | 387 | 457 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-32 | 387 | 471 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-126 | 37 | 360 | 325 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM64490.1 | 0 | 15 | 476 | 15 | 476 | beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| GenBank | ABK28569.1 | 0 | 15 | 476 | 15 | 476 | unknown [Arabidopsis thaliana] |
| EMBL | CAA49513.1 | 0 | 6 | 476 | 1 | 474 | beta-1,3-glucanase homologue [Brassica napus] |
| RefSeq | NP_189019.1 | 0 | 15 | 476 | 15 | 476 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_193144.1 | 0 | 1 | 476 | 1 | 478 | MEE48 (maternal effect embryo arrest 48); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 0 | 37 | 361 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 37 | 361 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 2cyg_A | 0 | 37 | 361 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghr_A | 0 | 37 | 361 | 1 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1aq0_B | 0 | 37 | 361 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
