| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra034585 |
| Family | CBM22 |
| Protein Properties | Length: 574 Molecular Weight: 63685.9 Isoelectric Point: 6.7017 |
| Chromosome | Chromosome/Scaffold: 08 Start: 12693703 End: 12696338 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM22 | 47 | 155 | 2.5e-21 |
| IIVNPDLQNGSQGWSQLGNAKVDFTEFGGNKFVIARGRNRSYDSVSQKVYLEKGLLYTFSAWLQVSQGNAPVRAVFKKNGEYKLAGSVIAESKCWSMLKG GLTVDESGP | |||
| GH10 | 221 | 481 | 0 |
| QNKLGFPFGCAVESNILGNQAYQDWFTKRFTVTTFGNEMKWYSTEVVRGKEDYSTADAMVKLFQQHGIAIRGHNIIWDNPIYQPSWVKALSVSDLYNAVK RRVFSVVTRYKGQLAGWDVVNENLHFSFLESKFGPKASYNVFAQAHALDPTTTVFMNEYNTLEQPGDPVATPARYLQKLRELQSIHVAGNIPLGIGLQSH FSTPNIPYMRSALDTLAATGLPNWLAEVDVAAPPNVQANYFEQILREGHAHPQVKGMVTWA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 574 Download |
| MKLLLLLLLA FFCLSLSRCE EKYVPYDYSA TIECLGNPNK PQYNGGIIVN PDLQNGSQGW 60 SQLGNAKVDF TEFGGNKFVI ARGRNRSYDS VSQKVYLEKG LLYTFSAWLQ VSQGNAPVRA 120 VFKKNGEYKL AGSVIAESKC WSMLKGGLTV DESGPADLLF ESEDTSAEIW VDSVSLQPFT 180 QEEWNSHHEQ SINMKRKGAV KIRAVNSAGE PVPNATISIL QNKLGFPFGC AVESNILGNQ 240 AYQDWFTKRF TVTTFGNEMK WYSTEVVRGK EDYSTADAMV KLFQQHGIAI RGHNIIWDNP 300 IYQPSWVKAL SVSDLYNAVK RRVFSVVTRY KGQLAGWDVV NENLHFSFLE SKFGPKASYN 360 VFAQAHALDP TTTVFMNEYN TLEQPGDPVA TPARYLQKLR ELQSIHVAGN IPLGIGLQSH 420 FSTPNIPYMR SALDTLAATG LPNWLAEVDV AAPPNVQANY FEQILREGHA HPQVKGMVTW 480 AGYNPKGCYR MCLTDGNFRN LPTGDVVDKL LREWGGLSGQ TTGLTDADGF FEASLFHGDY 540 NLDISHPLTN STASHSFKLT SEDSNPSPSV FRV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.0002 | 45 | 166 | 133 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 8.0e-31 | 248 | 450 | 215 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 6.0e-53 | 226 | 489 | 302 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 4.0e-81 | 259 | 507 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA19866.1 | 0 | 27 | 573 | 119 | 669 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19866.1 | 0 | 399 | 506 | 2 | 109 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_195109.2 | 0 | 1 | 573 | 1 | 576 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195110.3 | 0 | 17 | 573 | 16 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_195112.2 | 0 | 18 | 573 | 17 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 4e-28 | 228 | 507 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 4e-25 | 228 | 511 | 18 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 2e-24 | 228 | 513 | 18 | 303 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1i1x_A | 4e-24 | 228 | 513 | 18 | 303 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1i1w_A | 4e-24 | 228 | 513 | 18 | 303 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
