| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi1g04640.1 |
| Family | GH28 |
| Protein Properties | Length: 289 Molecular Weight: 31137.2 Isoelectric Point: 8.6339 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3112631 End: 3113751 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 211 | 284 | 1.3e-24 |
| DVQLYGTTNGARIKTYQGGSGYAKDIVFQNIIIDNVQNPIIIDQNYCDSAKPCENQESAVEISNVVFKNIRGTT | |||
| GH28 | 50 | 217 | 9.94922e-44 |
| WTAACSSSRPAVLLVPKGKTYLLKSITLSGPCKSNLVFMVKGTLAAPRSLSDWSEENRRHWIVLHGINGLTVTGGGTINGNGELWWKNSCKTNKARPCKQ APTALTFHLCSNLTVENLKIVNSQQINMSVEDCSDVQLARLSITAPGTSPNTDGIHITRSKDVQLYGT | |||
| Full Sequence |
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| Protein Sequence Length: 289 Download |
| MASTTAKLEP CMFSTSNASS VNTSVEFSID NYGARGDGKR DDTEALAKAW TAACSSSRPA 60 VLLVPKGKTY LLKSITLSGP CKSNLVFMVK GTLAAPRSLS DWSEENRRHW IVLHGINGLT 120 VTGGGTINGN GELWWKNSCK TNKARPCKQA PTALTFHLCS NLTVENLKIV NSQQINMSVE 180 DCSDVQLARL SITAPGTSPN TDGIHITRSK DVQLYGTTNG ARIKTYQGGS GYAKDIVFQN 240 IIIDNVQNPI IIDQNYCDSA KPCENQESAV EISNVVFKNI RGTTVSRV* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-30 | 27 | 286 | 321 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-35 | 54 | 218 | 165 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-36 | 27 | 288 | 326 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 4.0e-67 | 28 | 288 | 321 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-68 | 27 | 287 | 319 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC57273.1 | 0 | 25 | 287 | 51 | 371 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAZ03178.1 | 0 | 25 | 287 | 51 | 366 | hypothetical protein OsI_25331 [Oryza sativa Indica Group] |
| GenBank | EAZ39077.1 | 0 | 25 | 287 | 51 | 371 | hypothetical protein OsJ_23509 [Oryza sativa Japonica Group] |
| RefSeq | XP_002463688.1 | 0 | 27 | 287 | 62 | 380 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
| RefSeq | XP_002466242.1 | 0 | 27 | 287 | 75 | 394 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.0000005 | 26 | 204 | 27 | 241 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.0000005 | 26 | 204 | 27 | 241 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.0000005 | 26 | 204 | 27 | 241 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.0000005 | 26 | 204 | 27 | 241 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00003 | 121 | 280 | 113 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR809446 | 188 | 27 | 214 | 0 |
| DV536718 | 188 | 27 | 214 | 0 |
| DV514791 | 188 | 27 | 214 | 0 |
| BG365247 | 178 | 27 | 203 | 0 |
| DV028222 | 193 | 27 | 214 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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