| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi2g17920.1 |
| Family | GH28 |
| Protein Properties | Length: 227 Molecular Weight: 24057.5 Isoelectric Point: 5.2195 |
| Chromosome | Chromosome/Scaffold: 2 Start: 15958734 End: 15961332 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 90 | 209 | 8.5e-21 |
| APKAVHFEGCEDVSVMGITVQNSPRQHLAFTRYYNVKANYLQVTAPEGSPGTVGVLLASSTNVHVMDDLFSVGGDCVSIVGNCTDNLQGHECILLPFLCV RKQQISIAEKNNFSIDDISI | |||
| Full Sequence |
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| Protein Sequence Length: 227 Download |
| MALRARTTPL LPAALAVAFL LSSAAEARVL LTLDDFGAVG DGIANDTQAW SAACAMGDNT 60 YLNVPAGKSY QIWPVTLAGP CRGEIKLLAA PKAVHFEGCE DVSVMGITVQ NSPRQHLAFT 120 RYYNVKANYL QVTAPEGSPG TVGVLLASST NVHVMDDLFS VGGDCVSIVG NCTDNLQGHE 180 CILLPFLCVR KQQISIAEKN NFSIDDISID RTIDMLRGRV DGRSSA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-12 | 31 | 177 | 211 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-13 | 90 | 169 | 80 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 3.0e-16 | 31 | 181 | 206 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 7.0e-19 | 36 | 181 | 197 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 6.0e-25 | 30 | 173 | 208 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC79626.1 | 2.8026e-45 | 19 | 221 | 23 | 278 | hypothetical protein OsI_20838 [Oryza sativa Indica Group] |
| GenBank | EEE64553.1 | 0 | 19 | 221 | 23 | 237 | hypothetical protein OsJ_19405 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056198.1 | 1.4013e-45 | 19 | 221 | 23 | 278 | Os05g0542800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151374.1 | 0 | 26 | 217 | 24 | 260 | polygalacturonase [Zea mays] |
| RefSeq | XP_002440168.1 | 0 | 26 | 217 | 24 | 261 | hypothetical protein SORBIDRAFT_09g027160 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 0.006 | 96 | 182 | 336 | 421 | A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid |
| PDB | 2uvf_A | 0.006 | 96 | 182 | 336 | 421 | A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid |
| PDB | 2uve_B | 0.006 | 96 | 182 | 336 | 421 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 0.006 | 96 | 182 | 336 | 421 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| Signal Peptide | |||||
|---|---|---|---|---|---|
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| Cleavage Site | |||||
| 27 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| EG402793 | 214 | 28 | 174 | 0 |
| CT858434 | 207 | 28 | 164 | 1e-39 |
| FF347847 | 216 | 28 | 174 | 2e-38 |
| FF351756 | 213 | 28 | 174 | 1e-37 |
| FE609184 | 179 | 54 | 174 | 3e-36 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Carica papaya | evm.TU.contig_35388.1 | ||||
| Oryza sativa | LOC_Os06g16810.1 | ||||
| Prunus persica | ppa025007m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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