Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi4g04620.1 |
Family | CE8 |
Protein Properties | Length: 413 Molecular Weight: 43964.9 Isoelectric Point: 9.616 |
Chromosome | Chromosome/Scaffold: 4 Start: 3795674 End: 3797076 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 108 | 401 | 0 |
YVVSPNGKGKFRTISEAIKAIPEKNKQRVILDIQPGTYKEKFLIPTTKPFVTFLGNPRNPPVITWDDTAGTRGKDGAPIGTLGSATVAIESDYFMASGIV FKNHAPLAPPGAKGGQAVALRVFGTKAAFYNCTFDGGQDTLYDNKGLHYFKNCVVKGSVDFIFGFGRSLYVDCTMVSVTSQVAVLTAQQRSRSIAEATES GFSFVRCKIMGMGQIYLGRAWGDSSRVVYSFTDMGKEVIPVGWDGWNVEKPERTGVYYGEYKCSGPGAMSTQRIGWARVLDDTQARPFTGSHFV |
Full Sequence |
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Protein Sequence Length: 413 Download |
MEGDKSKTPS FAIAFLVLLL LASSFPPATS QHQQASFVIG GNGGGGGNKP SSGSAGGGGG 60 AGSFDDFITK NVQHYAVTEQ LYASKAKANG GKLLDADLSA AEAAKVRYVV SPNGKGKFRT 120 ISEAIKAIPE KNKQRVILDI QPGTYKEKFL IPTTKPFVTF LGNPRNPPVI TWDDTAGTRG 180 KDGAPIGTLG SATVAIESDY FMASGIVFKN HAPLAPPGAK GGQAVALRVF GTKAAFYNCT 240 FDGGQDTLYD NKGLHYFKNC VVKGSVDFIF GFGRSLYVDC TMVSVTSQVA VLTAQQRSRS 300 IAEATESGFS FVRCKIMGMG QIYLGRAWGD SSRVVYSFTD MGKEVIPVGW DGWNVEKPER 360 TGVYYGEYKC SGPGAMSTQR IGWARVLDDT QARPFTGSHF VYGNSWILPP PK* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 5.0e-85 | 110 | 409 | 308 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 8.0e-94 | 109 | 407 | 302 | + pectinesterase | ||
PLN02634 | PLN02634 | 2.0e-96 | 109 | 409 | 301 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-117 | 109 | 409 | 302 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 2.0e-119 | 110 | 412 | 305 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY81792.1 | 0 | 50 | 412 | 37 | 399 | hypothetical protein OsI_36964 [Oryza sativa Indica Group] |
GenBank | EEC69509.1 | 0 | 23 | 412 | 29 | 413 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
RefSeq | NP_001067039.1 | 0 | 27 | 412 | 33 | 412 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001068464.1 | 0 | 50 | 411 | 37 | 398 | Os11g0683700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002443368.1 | 0 | 39 | 412 | 52 | 430 | hypothetical protein SORBIDRAFT_08g018360 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2.94273e-44 | 109 | 407 | 10 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-38 | 109 | 407 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 2e-18 | 111 | 284 | 12 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-18 | 111 | 284 | 12 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 2e-18 | 111 | 284 | 12 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |