Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10011725m |
Family | GT8 |
Protein Properties | Length: 566 Molecular Weight: 66072.6 Isoelectric Point: 9.9664 |
Chromosome | Chromosome/Scaffold: 1 Start: 2963534 End: 2965951 |
Description | plant glycogenin-like starch initiation protein 5 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 265 | 481 | 4.4e-39 |
SKTTLSTFRAQRVAYVTLLHSSEVYVCGAIALAQSIRQSGSTKDMILLHDDSITNSSLTGLSLAGWKLRRVERIRSPFSKKRSYNEWNYSKLRVWQVTDY DKLVFIDADFIIVKNIDYLFFYPQLSAAGNNKFLFNSGVMVLEPSACLFEDLMQKAFKIESYNGGDQGFLNEYFVWWHRLSKRLNTMKYFGDESRNDKAR NLPENLEGIHYLGLKPW |
Full Sequence |
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Protein Sequence Length: 566 Download |
MVVKNQSSSR RFFMVYLILV SLSFLGLLLN FKPLFLLNPM ISSPSLVEIR YSLPQPVNRN 60 PIWLRLIRNY LPDQKKIRVG LLNFDENERE SYEAKGTSIL DNIHVSLGPL PKNLTWKTLF 120 PVWIDEDHTW HTPTCPEVPL PKMEGPDADV DVVVVKVPCD GFSEKRGLRD VFRLQVNLAA 180 ANLAVESDSR DVDRTVYVVF VGSCGPMHEI FRCDERVRRV ADYWVYRPDL RRLKQKLLMP 240 PGSCQIAPPL PLPAWMRDKN KSLTSKTTLS TFRAQRVAYV TLLHSSEVYV CGAIALAQSI 300 RQSGSTKDMI LLHDDSITNS SLTGLSLAGW KLRRVERIRS PFSKKRSYNE WNYSKLRVWQ 360 VTDYDKLVFI DADFIIVKNI DYLFFYPQLS AAGNNKFLFN SGVMVLEPSA CLFEDLMQKA 420 FKIESYNGGD QGFLNEYFVW WHRLSKRLNT MKYFGDESRN DKARNLPENL EGIHYLGLKP 480 WICYRDYDCN WDLKTRRVYA SESVHERWWK VYDKMPKKLK GYCGLNPKME KNIERWRKMA 540 KLNGFPERHW KIRVKDPRKK NLLRQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5597 | COG5597 | 1.0e-8 | 278 | 394 | 130 | + Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | ||
PLN00176 | PLN00176 | 7.0e-12 | 278 | 438 | 202 | + galactinol synthase | ||
cd06914 | GT8_GNT1 | 1.0e-15 | 278 | 438 | 174 | + GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases. | ||
pfam01501 | Glyco_transf_8 | 4.0e-39 | 280 | 484 | 248 | + Glycosyl transferase family 8. This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase. | ||
cd02537 | GT8_Glycogenin | 5.0e-71 | 277 | 515 | 249 | + Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB70408.1 | 0 | 1 | 565 | 1 | 546 | F7G19.14 [Arabidopsis thaliana] |
EMBL | CAN81983.1 | 0 | 59 | 563 | 44 | 544 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_172373.3 | 0 | 1 | 565 | 1 | 566 | PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | NP_175891.1 | 0 | 32 | 565 | 32 | 557 | PGSIP4 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002280832.1 | 0 | 59 | 563 | 44 | 544 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3usr_A | 2e-20 | 278 | 498 | 25 | 251 | A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 |
PDB | 1zcv_A | 2e-20 | 278 | 498 | 25 | 251 | A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn |
PDB | 3usq_A | 2e-20 | 278 | 498 | 25 | 251 | A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 |
PDB | 3u2x_B | 3e-20 | 278 | 498 | 6 | 232 | A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 |
PDB | 3u2x_A | 3e-20 | 278 | 498 | 6 | 232 | A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 |