Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10015679m |
Family | CBM43 |
Protein Properties | Length: 499 Molecular Weight: 55183.5 Isoelectric Point: 4.3223 |
Chromosome | Chromosome/Scaffold: 3 Start: 9127977 End: 9129473 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 380 | 460 | 3.1e-25 |
WCVLDPNASNLDDLPDNIDYACSLSDCTALGYGSSCNHLTAIGNASYAFNMYYQMHDQETWDCDFLGLGLITDEDPSDELC | |||
GH17 | 37 | 357 | 0 |
VGVNWGTMASHQLPPEKVVKMLQDNGFTKLKLFEADQNILDALVGSDIEVMIGIPNRFLKEVAQDTSVAASWVEENVTAYSYHGGVNIKYIAVGNEPFLQ TYNGTYVEFTLPALVNIQRALEEADLKNVKVTVPFNADIYFSPEANPVPSAGDFRPELRDATIEIINFLYSHDSPFTVNIYPFLSLYGNAYFPLDFAFFD GTNKPLRDGSLVYTNVFDANLDTLICAMERYSFLGMKIIVGEVGWPTDGDKNANVKSAKRFNQGMVKHAMSGNGTPARKGVVMDVYLFSLVDEDAKSIAP GTFERHWGIFGFDGRPKYELD |
Full Sequence |
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Protein Sequence Length: 499 Download |
MAEERSELTK CFFPHQIILC FFLFSQASVA SSNTSSVGVN WGTMASHQLP PEKVVKMLQD 60 NGFTKLKLFE ADQNILDALV GSDIEVMIGI PNRFLKEVAQ DTSVAASWVE ENVTAYSYHG 120 GVNIKYIAVG NEPFLQTYNG TYVEFTLPAL VNIQRALEEA DLKNVKVTVP FNADIYFSPE 180 ANPVPSAGDF RPELRDATIE IINFLYSHDS PFTVNIYPFL SLYGNAYFPL DFAFFDGTNK 240 PLRDGSLVYT NVFDANLDTL ICAMERYSFL GMKIIVGEVG WPTDGDKNAN VKSAKRFNQG 300 MVKHAMSGNG TPARKGVVMD VYLFSLVDED AKSIAPGTFE RHWGIFGFDG RPKYELDLSG 360 KGNDNPLVPV EDVKYLPKTW CVLDPNASNL DDLPDNIDYA CSLSDCTALG YGSSCNHLTA 420 IGNASYAFNM YYQMHDQETW DCDFLGLGLI TDEDPSDELC EFPVMIDTGN SPRLQPGSSR 480 VLTRFAATVL VMLVLTIL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-5 | 231 | 349 | 126 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-17 | 379 | 448 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-30 | 379 | 462 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-74 | 42 | 357 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI28113.1 | 0 | 18 | 494 | 529 | 973 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189076.1 | 0 | 1 | 498 | 1 | 500 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002281500.1 | 0 | 18 | 475 | 11 | 466 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324967.1 | 0 | 34 | 471 | 6 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515573.1 | 0 | 20 | 495 | 10 | 488 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 37 | 359 | 3 | 315 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
PDB | 3ur8_A | 0 | 37 | 359 | 3 | 315 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
PDB | 3ur7_B | 0 | 37 | 359 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 37 | 359 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3f55_D | 0 | 37 | 359 | 2 | 316 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |