Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10000171m |
Family | CBM22 |
Protein Properties | Length: 959 Molecular Weight: 106306 Isoelectric Point: 6.3769 |
Chromosome | Chromosome/Scaffold: 5 Start: 34929762 End: 34934474 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 69 | 207 | 1.4e-31 |
NLIVNNDFSMGLHSWHPNCCHAFIASAESHYPEGTSANSVGKHAVVTNRKECWQGLEQDITDKVSPGFTYLVSASVGVSGPHQGSADVLATLKLEQRDSE TSYLFIGKTSVSKDNWENLEGTFSLSAVPDRIVFYLEGP | |||
CBM22 | 242 | 378 | 4.4e-32 |
NIILNPKFEDGLNNWSGRGCKIVLHDSMADGKIVPLSGKVFASATERTQSWNGIQQEITGRVQRKLAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQ YIVIANVQATDKDWAQLHGKFLLNGSPARVVIYMEGP | |||
CBM22 | 413 | 554 | 2.8026e-45 |
NIITNSELSDGTNGWFPLGNCTLSVGTGSPHILPPMARDSLGPHEPLSGRYILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVHIGSGTTGPQNVNVAL GVDNQWVNGGQVEINDDRWHEIGGSFRIEKQPSKVMVYVQGP | |||
GH10 | 611 | 880 | 0 |
KQTQNSFPIGSCINRSQIDNEDFVNFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLRHNIETRGHCIFWEVQATVQPWIQSLNKNDLMKAV QNRLTGLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRAYMFKTALQLDPSATLFVNDYHVEDGGDPRSSPEKYIEHILDLQEQGAPVGGIGIQGHIDS PVGPIVCSALDKLGILGLPIWFTELDVSSINEYVRGEDLEVMLREAFAHPAVEGIMLWGFWELFMSRDSA |
Full Sequence |
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Protein Sequence Length: 959 Download |
MRRVFACCFT TRVSNSNTRS NQNQTHTPHQ HQRSGETMES QHANNGNDNS AALIAEHNKI 60 NLSTSTAANL IVNNDFSMGL HSWHPNCCHA FIASAESHYP EGTSANSVGK HAVVTNRKEC 120 WQGLEQDITD KVSPGFTYLV SASVGVSGPH QGSADVLATL KLEQRDSETS YLFIGKTSVS 180 KDNWENLEGT FSLSAVPDRI VFYLEGPAPG VDLLIRSVVI TCSSPSECEN KSIGCNIAGD 240 ENIILNPKFE DGLNNWSGRG CKIVLHDSMA DGKIVPLSGK VFASATERTQ SWNGIQQEIT 300 GRVQRKLAYD VTAVVRIFGN NVTTATVQAT LWVQTPNQRD QYIVIANVQA TDKDWAQLHG 360 KFLLNGSPAR VVIYMEGPPP GADILVNSLV VKHAEKIPPS PPPVIENPAF GVNIITNSEL 420 SDGTNGWFPL GNCTLSVGTG SPHILPPMAR DSLGPHEPLS GRYILVTNRT QTWMGPAQMI 480 TEKLKLFLTY QVSAWVHIGS GTTGPQNVNV ALGVDNQWVN GGQVEINDDR WHEIGGSFRI 540 EKQPSKVMVY VQGPASGIDV MVAGLQIFPV DREARFRQLR RQTDKIRKRD VVLKLSGLDC 600 SSILGTFVKV KQTQNSFPIG SCINRSQIDN EDFVNFFTKY FNWAVFGNEL KWYWTESQQG 660 NFNYKDADDM LDLCLRHNIE TRGHCIFWEV QATVQPWIQS LNKNDLMKAV QNRLTGLLTR 720 YKGKFRHYDV NNEMLHGSFY QDRLGKDIRA YMFKTALQLD PSATLFVNDY HVEDGGDPRS 780 SPEKYIEHIL DLQEQGAPVG GIGIQGHIDS PVGPIVCSAL DKLGILGLPI WFTELDVSSI 840 NEYVRGEDLE VMLREAFAHP AVEGIMLWGF WELFMSRDSA HLVNAEGDIN EAGKKFLNLK 900 QEWLSHAQGH VDEQGEFAFR GFHGTYTIVI PTLHKKIVKT FVVDKGESPL VVTIDLSS* 960 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 2.0e-15 | 412 | 557 | 156 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 4.0e-18 | 68 | 209 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 3.0e-34 | 639 | 870 | 253 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 2.0e-78 | 650 | 894 | 266 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 2.0e-80 | 615 | 900 | 306 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 38 | 956 | 1 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002283550.1 | 0 | 1 | 956 | 1 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 52 | 956 | 147 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 69 | 562 | 2 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 241 | 567 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 3e-30 | 602 | 870 | 22 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 3e-30 | 602 | 870 | 22 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 6e-30 | 648 | 869 | 47 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 6e-30 | 648 | 869 | 47 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 1e-29 | 648 | 869 | 47 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC918981 | 273 | 687 | 959 | 0 |
DY306813 | 273 | 687 | 959 | 0 |
EB442796 | 298 | 440 | 737 | 0 |
EB442796 | 112 | 109 | 220 | 0.000000004 |
EB442796 | 116 | 276 | 391 | 0.00000006 |
Sequence Alignments (This image is cropped. Click for full image.) |
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