Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10015484m |
Family | GT4 |
Protein Properties | Length: 402 Molecular Weight: 45129.6 Isoelectric Point: 5.5775 |
Chromosome | Chromosome/Scaffold: 2 Start: 3761358 End: 3763055 |
Description | UDP-Glycosyltransferase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT4 | 185 | 328 | 6.3e-22 |
NTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWAPVNVIDTHIPQIDLPRLYKAADVFVL PSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLPVG |
Full Sequence |
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Protein Sequence Length: 402 Download |
MAPFLSGGGY SSESWSYILA LNEHVKNPRF KLAIEHHGDL QSLQFWEGLP HHMRNLAVEL 60 YNTECRTNET VVICHSEPGA WYPPLFDTLP CPPTPGYGDF MAVIGRTMFE TDRVSPEHVK 120 RCNRMDFVWV PTDFHVSTFI RSGVDPAKVV KIVQPVHVGF FDPVNCDPID LASIGKPVLG 180 LSNMNTSSKE FVFLSVFKWE YRKGWDVLLK AYLEEFSKAD GVVLYLLTNP YHSGRDFGNK 240 IVNFVEDSDL EKPDDGWAPV NVIDTHIPQI DLPRLYKAAD VFVLPSRGEG WGRPLVEAMS 300 MGLPVIATNW SGPTEYLTEE NGYPLPVGRM SEVTEGPFKG HFWAEPSVDK LRALMRLVMS 360 NVDEAKAKGK QAREDMIQRF SPETVAGIVT DHIKDILSSK I* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd03808 | GT1_cap1E_like | 9.0e-18 | 247 | 386 | 146 | + This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. | ||
pfam00534 | Glycos_transf_1 | 9.0e-19 | 189 | 375 | 194 | + Glycosyl transferases group 1. Mutations in this domain of human PIGA lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family. | ||
COG0438 | RfaG | 4.0e-23 | 123 | 400 | 280 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
cd03801 | GT1_YqgM_like | 7.0e-24 | 23 | 386 | 373 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
cd03798 | GT1_wlbH_like | 5.0e-25 | 141 | 396 | 258 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG51382.1 | 0 | 1 | 401 | 1 | 396 | AC011560_14 unknown protein; 24439-25635 [Arabidopsis thaliana] |
EMBL | CAN61336.1 | 0 | 1 | 386 | 1 | 382 | hypothetical protein [Vitis vinifera] |
EMBL | CBI25012.1 | 0 | 1 | 400 | 1 | 396 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002268345.1 | 0 | 1 | 389 | 90 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311937.1 | 0 | 1 | 401 | 1 | 401 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3oy7_B | 0.0009 | 175 | 326 | 172 | 321 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3oy7_A | 0.0009 | 175 | 326 | 172 | 321 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3oy2_B | 0.0009 | 175 | 326 | 172 | 321 | A Chain A, Crystal Structure Of A Putative Glycosyltransferase From Paramecium Bursaria Chlorella Virus Ny2a |
PDB | 3oy2_A | 0.0009 | 175 | 326 | 172 | 321 | A Chain A, Crystal Structure Of A Putative Glycosyltransferase From Paramecium Bursaria Chlorella Virus Ny2a |
PDB | 2jjm_L | 0.003 | 269 | 401 | 275 | 394 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX288409 | 220 | 177 | 396 | 0 |
HO456398 | 373 | 1 | 369 | 0 |
DW120454 | 262 | 139 | 397 | 0 |
FC063721 | 228 | 134 | 361 | 0 |
GW597692 | 303 | 69 | 348 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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