Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10023611m |
Family | GH19 |
Protein Properties | Length: 199 Molecular Weight: 21752.7 Isoelectric Point: 3.9408 |
Chromosome | Chromosome/Scaffold: 3 Start: 36801865 End: 36804436 |
Description | homolog of carrot EP3-3 chitinase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 38 | 177 | 1.4013e-45 |
VVDIVTPKFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVTHETGQFCCIEEIDGRRSKDLLQTWQDYYDESSTLYPC NSSKGYYGQGQIQLSWNFNYGPAGNSIGFDELNAPATVAN |
Full Sequence |
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Protein Sequence Length: 199 Download |
MWQCCSQWGY CGTSDEYCGA GSQQGPYDAP PATNDVSVVD IVTPKFFNGI LNQADASCVG 60 KNFYSRSAFL DALGSFSQFG RTGAEEDTMR EIAAFFAHVT HETGQFCCIE EIDGRRSKDL 120 LQTWQDYYDE SSTLYPCNSS KGYYGQGQIQ LSWNFNYGPA GNSIGFDELN APATVANEQY 180 FSECCNQLGV STGDNLTC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
smart00270 | ChtBD1 | 1.0e-5 | 4 | 25 | 22 | + Chitin binding domain. | ||
pfam00182 | Glyco_hydro_19 | 8.0e-48 | 41 | 178 | 143 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 3.0e-51 | 42 | 177 | 139 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0008061 | chitin binding |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACM45716.1 | 0 | 4 | 198 | 34 | 272 | class IV chitinase [Pyrus pyrifolia] |
EMBL | CAN79254.1 | 0 | 4 | 198 | 39 | 274 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002274537.1 | 0 | 4 | 198 | 39 | 274 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002274758.1 | 0 | 4 | 198 | 39 | 274 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326039.1 | 0 | 3 | 198 | 22 | 258 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3hbh_A | 8e-35 | 37 | 182 | 1 | 136 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3hbe_X | 8e-35 | 37 | 182 | 1 | 136 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3hbd_A | 8e-35 | 37 | 182 | 1 | 136 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 3iwr_B | 6e-23 | 4 | 182 | 18 | 206 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 3iwr_A | 6e-23 | 4 | 182 | 18 | 206 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX672845 | 243 | 4 | 197 | 0 |
FC923960 | 182 | 4 | 184 | 0 |
FC913159 | 125 | 1 | 125 | 0 |
FC922253 | 125 | 1 | 125 | 0 |
DY298019 | 125 | 1 | 125 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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