| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10030382m |
| Family | CBM22 |
| Protein Properties | Length: 581 Molecular Weight: 64954.3 Isoelectric Point: 7.4159 |
| Chromosome | Chromosome/Scaffold: 8 Start: 2044888 End: 2049247 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 52 | 167 | 3.8e-21 |
| IIKNPELSHGLKGWSAFGNAKIEQRESGGNKFLVAHGRSQPYDSISQKVYLEENKFYTLSAWIQVSEGAAPVTAVFKTITGFKHAGAVVAESKCWSMLKG GLSPDASGLAELYFES | |||
| GH10 | 227 | 489 | 0 |
| KQLQFPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADK RINSVTSRYKGQVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHF STPNIPYMRASIDTLGATGLPIWLTEVDVQSSPNQAQYLEQILREAHAHPKVQGIVVWAAWKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 581 Download |
| MTFREKNNPL LLQLLLCTLL CAGFEAAALS YDYTASIECL EKPHKPQYGG GIIKNPELSH 60 GLKGWSAFGN AKIEQRESGG NKFLVAHGRS QPYDSISQKV YLEENKFYTL SAWIQVSEGA 120 APVTAVFKTI TGFKHAGAVV AESKCWSMLK GGLSPDASGL AELYFESKNT SVDIWVDSIS 180 LQPFTQEEWR SQRHQSIEKN HKTNVRIQAV DKQGKPLQNA NISIEQKQLQ FPFGCAINKN 240 ILTNTAYQNW FTSRFKVTAF EDEMKWYSTE ASPGREDYSA SDAMLQFAKN HNIAVRGHNI 300 FWDDPQYQPG WVNSLSPSDL SKAADKRINS VTSRYKGQVI AWDVVNENLH FSFFESKLGQ 360 NASGVFFNRV HSLDGATTLF MNDYNTIEDS RDGKATPAMY LQKLRQISEF PGNQNLRIGI 420 GLESHFSTPN IPYMRASIDT LGATGLPIWL TEVDVQSSPN QAQYLEQILR EAHAHPKVQG 480 IVVWAAWKPS GCYRMCLTDN NFKNLATGDV VDKLLHEWGS KRLEGKTDAD GFFDTTLFHG 540 DYEVKINRQA ANTIFSMAQS FKVLPTNASQ TISMLIKVSA * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 5.0e-5 | 50 | 171 | 134 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-31 | 257 | 455 | 211 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-54 | 231 | 503 | 300 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 6.0e-77 | 264 | 511 | 275 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN10199.1 | 0 | 1 | 578 | 1 | 584 | endoxylanase [Carica papaya] |
| RefSeq | XP_002264556.1 | 0 | 28 | 580 | 109 | 658 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002264605.1 | 0 | 22 | 580 | 18 | 574 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002313180.1 | 0 | 37 | 556 | 1 | 520 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532418.1 | 0 | 23 | 577 | 15 | 568 | Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 9e-28 | 233 | 503 | 15 | 292 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1e0v_A | 7e-25 | 233 | 514 | 16 | 300 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0n_A | 8e-25 | 233 | 514 | 16 | 300 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0m_A | 8e-25 | 233 | 514 | 16 | 300 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0l_A | 8e-25 | 233 | 514 | 16 | 300 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
