| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G026804_T01 |
| Family | GH28 |
| Protein Properties | Length: 495 Molecular Weight: 51666.7 Isoelectric Point: 6.3108 |
| Chromosome | Chromosome/Scaffold: 8 Start: 32752568 End: 32754794 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 119 | 462 | 0 |
| WDTACQDDGDSVVLAAAGYSFLVHTTVFTGPCQGSVTIQLDGAIVAPSDPDTWPANSKRNWLLFYQAHGMSLQGAGLIDGRGQKWWELPCKSHKGQGGSS GHGASCDSPVALRFFMTNNVTVQGLKVQNSPEFHIRFDSCCGVVASGLSISSPALSPNTDGIHVENTEDVLITNTAVSNGDDCVSIGAGTRNMHVENVTC GPGGHGISIGSLGKQGSRACVANVTVRNAVIRHSDNGVRIKTWQGGSGAVSSVSFENVRMDAVRNPIIIDQYYCLSKSCDNATSAVFVSGVSYAGIRGTY DPRTTPIHFGCSDAVPCTNITLSDVELLPASGDSTIDNPFCWNV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 495 Download |
| MEFTVVRTAI VLLLSLAVSS TFLCGGVQGG RHYHYHHTTH TKHNTAHPPS AHAPGPASGR 60 RLPPVSPPPS DSSGYPTPGA APEPAPAPAA AGTMYDVVKD FGAVGDGVTD DTDALKTAWD 120 TACQDDGDSV VLAAAGYSFL VHTTVFTGPC QGSVTIQLDG AIVAPSDPDT WPANSKRNWL 180 LFYQAHGMSL QGAGLIDGRG QKWWELPCKS HKGQGGSSGH GASCDSPVAL RFFMTNNVTV 240 QGLKVQNSPE FHIRFDSCCG VVASGLSISS PALSPNTDGI HVENTEDVLI TNTAVSNGDD 300 CVSIGAGTRN MHVENVTCGP GGHGISIGSL GKQGSRACVA NVTVRNAVIR HSDNGVRIKT 360 WQGGSGAVSS VSFENVRMDA VRNPIIIDQY YCLSKSCDNA TSAVFVSGVS YAGIRGTYDP 420 RTTPIHFGCS DAVPCTNITL SDVELLPASG DSTIDNPFCW NVYGSTATPT VPPVPCLIEG 480 VPRRVDDNST LKCY* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-70 | 118 | 467 | 354 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-75 | 118 | 477 | 365 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-79 | 98 | 445 | 350 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-84 | 123 | 453 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-113 | 97 | 477 | 382 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD86981.1 | 0 | 93 | 494 | 16 | 410 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAY73623.1 | 0 | 20 | 494 | 22 | 503 | hypothetical protein OsI_01510 [Oryza sativa Indica Group] |
| RefSeq | NP_001042805.1 | 0 | 28 | 494 | 29 | 503 | Os01g0296200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150436.1 | 0 | 1 | 494 | 1 | 499 | polygalacturonase [Zea mays] |
| RefSeq | XP_002455500.1 | 0 | 1 | 494 | 1 | 506 | hypothetical protein SORBIDRAFT_03g012280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 5e-22 | 188 | 462 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-22 | 188 | 462 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-22 | 188 | 462 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-22 | 188 | 462 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 5e-22 | 188 | 462 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
