| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G079263_T01 |
| Family | GH28 |
| Protein Properties | Length: 491 Molecular Weight: 51726.6 Isoelectric Point: 8.0643 |
| Chromosome | Chromosome/Scaffold: 6 Start: 162010397 End: 162015714 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 137 | 475 | 0 |
| AAACSSTQEAVLAVPAGKVYQIWPVQLSGPCKKRLKLLISGAIVAPSSPDEWAGRDPMKWLYVYGVDGLSVSGGGTIDGMGQQWWASTCKRKKTQPCYSG PRPKAVHFEECREVSVQGVTLQNAQQFQLTFTRCSCVKASFLRVVAPADSPNTDGIHLNDTSHVRITDNLISTGDDCVSMVGNCSDVRVKDISCGPGHGI SIGSLGKNRTTDMVEDVKVDTCLLTNTTNGVRIKSWQGGTGFARDLRFENIVMRNVSNPIIIDQYYCDQPTPCANQTQAVEVRRVEFAGIRGTSATPQAI SIACSDAVPCRDLELANVNLTLEGGGAGRATALCYRASG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 491 Download |
| MAGLQRSSET FRRSGSSGLV WDDNKSFSGE IKPAEEDGGA GAARAVERSR STGHAHAGYR 60 ATGRVPPALD PPSPRVAVSA RATMAKAVPS PLAAVAVLAL LLLCRGAEAR VLLTLDDFGG 120 VGDGIANDTQ ALLDAWAAAC SSTQEAVLAV PAGKVYQIWP VQLSGPCKKR LKLLISGAIV 180 APSSPDEWAG RDPMKWLYVY GVDGLSVSGG GTIDGMGQQW WASTCKRKKT QPCYSGPRPK 240 AVHFEECREV SVQGVTLQNA QQFQLTFTRC SCVKASFLRV VAPADSPNTD GIHLNDTSHV 300 RITDNLISTG DDCVSMVGNC SDVRVKDISC GPGHGISIGS LGKNRTTDMV EDVKVDTCLL 360 TNTTNGVRIK SWQGGTGFAR DLRFENIVMR NVSNPIIIDQ YYCDQPTPCA NQTQAVEVRR 420 VEFAGIRGTS ATPQAISIAC SDAVPCRDLE LANVNLTLEG GGAGRATALC YRASGKSAGT 480 VVPPSCLARS * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-88 | 118 | 490 | 375 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 4.0e-88 | 118 | 486 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-92 | 140 | 470 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 8.0e-107 | 108 | 483 | 378 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-154 | 112 | 490 | 379 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF80870.1 | 0 | 108 | 490 | 29 | 411 | unknown [Zea mays] |
| GenBank | ACF88280.1 | 0 | 84 | 490 | 1 | 407 | unknown [Zea mays] |
| GenBank | ACR38523.1 | 0 | 84 | 490 | 1 | 382 | unknown [Zea mays] |
| RefSeq | NP_001151886.1 | 0 | 108 | 490 | 29 | 411 | polygalacturonase [Zea mays] |
| RefSeq | XP_002440167.1 | 0 | 104 | 490 | 21 | 408 | hypothetical protein SORBIDRAFT_09g027150 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-22 | 207 | 402 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-17 | 205 | 457 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-17 | 205 | 457 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-17 | 205 | 457 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-17 | 205 | 457 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
|---|
 |
