| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G079263_T02 |
| Family | GH28 |
| Protein Properties | Length: 383 Molecular Weight: 40355 Isoelectric Point: 7.1588 |
| Chromosome | Chromosome/Scaffold: 6 Start: 162013020 End: 162015741 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 54 | 367 | 0 |
| AAACSSTQEAVLAVPAGKVYQIWPVQLSGPCKKRLKLLISGAIVAPSSPDEWAGRDPMKWLYVYGVDGLSVSGGGTIDGMGQQWWASTCKRKKTQPCYSG PRPKAVHFEECREASFLRVVAPADSPNTDGIHLNDTSHVRITDNLISTGDDCVSMVGNCSDVRVKDISCGPGHGISIGSLGKNRTTDMVEDVKVDTCLLT NTTNGVRIKSWQGGTGFARDLRFENIVMRNVSNPIIIDQYYCDQPTPCANQTQAVEVRRVEFAGIRGTSATPQAISIACSDAVPCRDLELANVNLTLEGG GAGRATALCYRASG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 383 Download |
| MAKAVPSPLA AVAVLALLLL CRGAEARVLL TLDDFGGVGD GIANDTQALL DAWAAACSST 60 QEAVLAVPAG KVYQIWPVQL SGPCKKRLKL LISGAIVAPS SPDEWAGRDP MKWLYVYGVD 120 GLSVSGGGTI DGMGQQWWAS TCKRKKTQPC YSGPRPKAVH FEECREASFL RVVAPADSPN 180 TDGIHLNDTS HVRITDNLIS TGDDCVSMVG NCSDVRVKDI SCGPGHGISI GSLGKNRTTD 240 MVEDVKVDTC LLTNTTNGVR IKSWQGGTGF ARDLRFENIV MRNVSNPIII DQYYCDQPTP 300 CANQTQAVEV RRVEFAGIRG TSATPQAISI ACSDAVPCRD LELANVNLTL EGGGAGRATA 360 LCYRASGKSA GTVVPPSCLA RS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-82 | 57 | 362 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 8.0e-83 | 35 | 378 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 2.0e-84 | 35 | 382 | 357 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-97 | 25 | 375 | 376 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-145 | 29 | 382 | 379 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF80870.1 | 0 | 25 | 382 | 29 | 411 | unknown [Zea mays] |
| GenBank | ACF88280.1 | 0 | 1 | 382 | 1 | 407 | unknown [Zea mays] |
| GenBank | ACR38523.1 | 0 | 1 | 382 | 1 | 382 | unknown [Zea mays] |
| RefSeq | NP_001151886.1 | 0 | 25 | 382 | 29 | 411 | polygalacturonase [Zea mays] |
| RefSeq | XP_002440167.1 | 0 | 21 | 382 | 21 | 408 | hypothetical protein SORBIDRAFT_09g027150 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 1e-16 | 180 | 363 | 165 | 342 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1bhe_A | 0.000000000000002 | 124 | 294 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000003 | 122 | 349 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000003 | 122 | 349 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000003 | 122 | 349 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
