| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G107073_T02 |
| Family | GH28 |
| Protein Properties | Length: 507 Molecular Weight: 53991.1 Isoelectric Point: 7.1283 |
| Chromosome | Chromosome/Scaffold: 6 Start: 56102468 End: 56105100 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 112 | 459 | 0 |
| GGGGGMLYVPAGKWLTGPFNLTSHFTLYLHQDAVILGSQDVGEWPIVDPLPSYGRGRDKVGGRFASLIGGSNLTDVVITGSNGTIDGQGAMWWSKFHKNQ LKYTRGYLIELMHSDTIYISNLTLLNSPAWNIHPVYSSNIVVQGITILAPTNSPNTDGINPDSCSHVRIEDCYIVSGDDCVAIKSGWDEYGISYGMPSQH IVIRRLTCVSPTSAVIALGSEMSGGIQDVRAEDITAINTESAVRIKTAVGRGAYVRDVFARRMTLTTMKRVFWMTGDYKSHPDDKYDPNAVPVVANISYQ DVVATGVYKEAARLQGIQGAPFRGICVANVTADLSKSRKYPWNCADIE | |||
| Full Sequence |
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| Protein Sequence Length: 507 Download |
| MAPRTLGLNA APLLQISSSS QLKVSRLSGH YVRMEILRSL CLLALAAAAA VSGRRHGASP 60 ARGSGQSMYL APACRAHTAS VADFGGVGDG TTSNTAAFRS AVDHLSQYSG EGGGGGMLYV 120 PAGKWLTGPF NLTSHFTLYL HQDAVILGSQ DVGEWPIVDP LPSYGRGRDK VGGRFASLIG 180 GSNLTDVVIT GSNGTIDGQG AMWWSKFHKN QLKYTRGYLI ELMHSDTIYI SNLTLLNSPA 240 WNIHPVYSSN IVVQGITILA PTNSPNTDGI NPDSCSHVRI EDCYIVSGDD CVAIKSGWDE 300 YGISYGMPSQ HIVIRRLTCV SPTSAVIALG SEMSGGIQDV RAEDITAINT ESAVRIKTAV 360 GRGAYVRDVF ARRMTLTTMK RVFWMTGDYK SHPDDKYDPN AVPVVANISY QDVVATGVYK 420 EAARLQGIQG APFRGICVAN VTADLSKSRK YPWNCADIEG VSANVSPAPC DPLQGAHDGA 480 CPFPTDTLPI DQVTVQQCAY DIPATN* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 9.0e-22 | 81 | 470 | 419 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-24 | 78 | 441 | 378 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 5.0e-24 | 80 | 464 | 398 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-29 | 179 | 470 | 297 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-54 | 79 | 376 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG41831.1 | 0 | 68 | 506 | 1 | 439 | glycoside hydrolase, family 28 [Zea mays] |
| DDBJ | BAD67712.1 | 0 | 34 | 505 | 14 | 484 | putative polygalacturonase [Oryza sativa Japonica Group] |
| RefSeq | NP_001151164.1 | 0 | 1 | 506 | 1 | 486 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002437680.1 | 0 | 1 | 503 | 1 | 485 | hypothetical protein SORBIDRAFT_10g000660 [Sorghum bicolor] |
| RefSeq | XP_002509850.1 | 0 | 69 | 499 | 43 | 474 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 6.02558e-44 | 71 | 447 | 20 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 6.02558e-44 | 71 | 447 | 20 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 6.02558e-44 | 71 | 447 | 20 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 6.02558e-44 | 71 | 447 | 20 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.00000000000001 | 73 | 403 | 151 | 516 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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