| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G119494_T04 |
| Family | GH28 |
| Protein Properties | Length: 221 Molecular Weight: 23615.9 Isoelectric Point: 8.8663 |
| Chromosome | Chromosome/Scaffold: 1 Start: 5345153 End: 5347313 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 79 | 213 | 1.1e-25 |
| GAALVVPPGKWLTGPFNLTSCFTLYLDEGAEILASQDMKHWPLIAPLPSYGRGRDEPGPRYSNFIGGSNLTDVIITGKNGTINGQGQVWWDKFHAKELKF TRGHLLELLYSDNIIISNVTFVDAPYWNLHPTYCT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 221 Download |
| MAPGRSLRPA GTAAVLWAAS LLLLATSCAR AGGAYAGPGC RKHVARVTEY GAVGDGRTLN 60 TAAFARAVAD LARRAPDGGA ALVVPPGKWL TGPFNLTSCF TLYLDEGAEI LASQDMKHWP 120 LIAPLPSYGR GRDEPGPRYS NFIGGSNLTD VIITGKNGTI NGQGQVWWDK FHAKELKFTR 180 GHLLELLYSD NIIISNVTFV DAPYWNLHPT YCTYGSHSQL * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 0.005 | 47 | 220 | 181 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-6 | 141 | 203 | 64 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 1.0e-6 | 47 | 220 | 176 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 1.0e-17 | 47 | 212 | 188 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD32865.1 | 0 | 15 | 213 | 11 | 209 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABE66001.1 | 0 | 35 | 212 | 35 | 213 | glycoside hydrolase family 28 protein/polygalacturonase family protein [Arabidopsis thaliana] |
| RefSeq | NP_001048813.1 | 0 | 15 | 213 | 9 | 208 | Os03g0124900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151102.1 | 0 | 1 | 213 | 1 | 213 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002468601.1 | 0 | 1 | 213 | 1 | 213 | hypothetical protein SORBIDRAFT_01g048880 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.000000003 | 49 | 210 | 32 | 219 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.000000003 | 49 | 210 | 32 | 219 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.000000003 | 49 | 210 | 32 | 219 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.000000003 | 49 | 210 | 32 | 219 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00004 | 77 | 211 | 37 | 179 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
