| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G135763_T01 |
| Family | GH28 |
| Protein Properties | Length: 517 Molecular Weight: 56101 Isoelectric Point: 9.7312 |
| Chromosome | Chromosome/Scaffold: 7 Start: 121252254 End: 121256304 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 126 | 478 | 0 |
| AIAERGGGRLTVPAGRWLTAPFNLTSHMTLFLAAGAEILGIQDERYWPLMSPLPSYGYGREHKGPRYGSLIHGQDLKHVTITGHNGTINGQGQSWWVKFR RKLLNHTRGPLVQLMRSSNIIISNITLRDSPFWTLHTYDCKNVTISETTILAPIAGAPNTDGIDPDSCENVVIKNCYISVGDDGIAIKSGWDQYGIAYGR PSANITIQNVVIRSMVSAGVSIGSEMSGGVSDVLVENVHVWDSRRGVRIKTAPGRGAYVTNVIYQNITFENVRVGIVIKTDYNEHPDEGFDPKAVPTIGN ISYTSIHGHRVRVPVRIQGSAQIPVKNVTFHDMSIGIVDKKHHVFQCSFVQGQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 517 Download |
| MLEATAAASS PRAAAAAVAA GAAAAAVVSS PRRGGGSAHN HRRWAPAPFR ACLLALWLLG 60 FALVFLWQST SVGRVRLYTR PPMPKRAVAS LGHWAASPPV YDLREFGAVG DGRTVNTAAF 120 ESAIAAIAER GGGRLTVPAG RWLTAPFNLT SHMTLFLAAG AEILGIQDER YWPLMSPLPS 180 YGYGREHKGP RYGSLIHGQD LKHVTITGHN GTINGQGQSW WVKFRRKLLN HTRGPLVQLM 240 RSSNIIISNI TLRDSPFWTL HTYDCKNVTI SETTILAPIA GAPNTDGIDP DSCENVVIKN 300 CYISVGDDGI AIKSGWDQYG IAYGRPSANI TIQNVVIRSM VSAGVSIGSE MSGGVSDVLV 360 ENVHVWDSRR GVRIKTAPGR GAYVTNVIYQ NITFENVRVG IVIKTDYNEH PDEGFDPKAV 420 PTIGNISYTS IHGHRVRVPV RIQGSAQIPV KNVTFHDMSI GIVDKKHHVF QCSFVQGQVI 480 GYVFPVPCKN LDLYDERRGL VKQSTLQNIS DIDYSF* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 5.0e-26 | 97 | 433 | 355 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 3.0e-29 | 102 | 460 | 371 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 1.0e-30 | 105 | 488 | 400 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-42 | 196 | 466 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-61 | 68 | 425 | 383 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84640.1 | 0 | 34 | 516 | 36 | 526 | hypothetical protein OsI_31518 [Oryza sativa Indica Group] |
| GenBank | EEE69791.1 | 0 | 91 | 516 | 1 | 426 | hypothetical protein OsJ_29512 [Oryza sativa Japonica Group] |
| RefSeq | NP_001063274.1 | 0 | 34 | 516 | 36 | 526 | Os09g0439400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002277239.1 | 0 | 42 | 516 | 20 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002460269.1 | 0 | 1 | 516 | 1 | 518 | hypothetical protein SORBIDRAFT_02g025730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.96182e-44 | 80 | 460 | 20 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.96182e-44 | 80 | 460 | 20 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.96182e-44 | 80 | 460 | 20 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.96182e-44 | 80 | 460 | 20 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-19 | 142 | 460 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
