| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G139396_T01 |
| Family | PL1 |
| Protein Properties | Length: 377 Molecular Weight: 40577.3 Isoelectric Point: 10.5417 |
| Chromosome | Chromosome/Scaffold: 8 Start: 171750536 End: 171752008 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 99 | 299 | 0 |
| WITFQRDMHIRLAQPLFVKSFTAIDGRGADVHIAGGAGIVLHRVSSVIIHGLHIHGCRSQPEGLAVRPGGAVQPAGGMDGDAIRLVSSAKVWIDHNSLSR CEDGLLDVTVGSTDVTISNNWFFNHDKVMLLGHDDGHAEDRRMRVTVAFNRFGPSVNQRMPRIRHGYAHVVNNVYLGWKDYAIGGSMGPSVKSQGNLFVA S | |||
| Full Sequence |
|---|
| Protein Sequence Length: 377 Download |
| MASKEVLAIV FLSILLHGAV TTKVVDGANV IDRCWRGQPN WAANRQRLAA CSVGFAGKMR 60 QNRGPGVIPY TVTDPGDDPV RPRPGTLRYG ATVLGGKVWI TFQRDMHIRL AQPLFVKSFT 120 AIDGRGADVH IAGGAGIVLH RVSSVIIHGL HIHGCRSQPE GLAVRPGGAV QPAGGMDGDA 180 IRLVSSAKVW IDHNSLSRCE DGLLDVTVGS TDVTISNNWF FNHDKVMLLG HDDGHAEDRR 240 MRVTVAFNRF GPSVNQRMPR IRHGYAHVVN NVYLGWKDYA IGGSMGPSVK SQGNLFVASA 300 AADNKKVTRR MPVAGREWDW ASIGDSFLNG AVFKQTGSRV RPNYNKHQAF AAASSNQVKS 360 LTKDAGVLRC SVGSAC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 8.0e-27 | 116 | 367 | 268 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-60 | 118 | 296 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-69 | 105 | 299 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR37663.1 | 0 | 59 | 312 | 1 | 261 | unknown [Zea mays] |
| DDBJ | BAD01325.1 | 0 | 24 | 376 | 23 | 384 | putative Cup s 1 pollen allergen [Oryza sativa Japonica Group] |
| GenBank | EAZ06386.1 | 0 | 24 | 376 | 23 | 384 | hypothetical protein OsI_28615 [Oryza sativa Indica Group] |
| RefSeq | XP_002299118.1 | 0 | 29 | 376 | 2 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002458626.1 | 0 | 1 | 376 | 1 | 373 | hypothetical protein SORBIDRAFT_03g036930 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 29 | 368 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 29 | 368 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-18 | 128 | 342 | 77 | 294 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 2e-17 | 114 | 296 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.000000000000002 | 93 | 299 | 58 | 279 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
