| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G139828_T02 |
| Family | GH28 |
| Protein Properties | Length: 164 Molecular Weight: 17012.8 Isoelectric Point: 4.2468 |
| Chromosome | Chromosome/Scaffold: 4 Start: 2862831 End: 2866685 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 2 | 127 | 6.9e-25 |
| SGGISDIHVNHLRIHDSSKGISFKTSPGRGGYIEDVVISEVQMENVHVGIEFTGNCSTHPDDSFDPSDLPAIDHVTMKNMAGTNISVAGVLSGIEGAPFT AICLSNLNFSMAAGSGPSSWSCSDVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 164 Download |
| MSGGISDIHV NHLRIHDSSK GISFKTSPGR GGYIEDVVIS EVQMENVHVG IEFTGNCSTH 60 PDDSFDPSDL PAIDHVTMKN MAGTNISVAG VLSGIEGAPF TAICLSNLNF SMAAGSGPSS 120 WSCSDVSGYS EAVFPEPCTE LRDPSSSSSV CYSLASYSAI ETA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5434 | PGU1 | 0.0007 | 1 | 49 | 49 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| PLN02188 | PLN02188 | 0.0003 | 3 | 139 | 143 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 0.0002 | 5 | 126 | 124 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF81718.1 | 0 | 44 | 163 | 1 | 120 | unknown [Zea mays] |
| GenBank | EEC68574.1 | 0 | 1 | 160 | 287 | 446 | hypothetical protein OsI_36908 [Oryza sativa Indica Group] |
| RefSeq | NP_001068399.1 | 0 | 1 | 160 | 287 | 446 | Os11g0658800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130359.1 | 0 | 1 | 163 | 296 | 458 | hypothetical protein LOC100191454 [Zea mays] |
| RefSeq | XP_002451220.1 | 0 | 1 | 163 | 286 | 448 | hypothetical protein SORBIDRAFT_05g025980 [Sorghum bicolor] |
| Hydropathy |
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