| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G153262_T01 |
| Family | GH28 |
| Protein Properties | Length: 289 Molecular Weight: 31707.3 Isoelectric Point: 11.4645 |
| Chromosome | Chromosome/Scaffold: 6 Start: 99351653 End: 99352964 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 67 | 232 | 0 |
| QLNFTCPCKGDVTIQVDGNLLATMDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYDCKILPNSLVMYFVNNGEVSGVTLLNSKFFH MNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 289 Download |
| MVRRKSQRAS MRKRPGLVGP STSPSWAPPA MARQTTRRLC RRHVHRRAAA LGSRQSSYPR 60 AFFFVGQLNF TCPCKGDVTI QVDGNLLATM DLSQYKEHGN WIEILRVDNL VITGKGNLDG 120 QGPAVWSKNS CTKKYDCKIL PNSLVMYFVN NGEVSGVTLL NSKFFHMNMY QCKNMLIKDV 180 TVTAPGDSPN TDGIHMGDSS GITITNTVIG VGDDCISIGP GTSKVNITGV TRTRRTSRTS 240 TSRIALLRRR CSASASRRTR TPPPCSPSPR STTRISRWRT QPTPSSST* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-25 | 63 | 230 | 169 | + Probable polygalacturonase At3g15720 | ||
| PLN02155 | PLN02155 | 1.0e-27 | 59 | 228 | 171 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-29 | 63 | 227 | 169 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 5.0e-49 | 59 | 230 | 172 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-59 | 59 | 230 | 172 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PIR | 0 | 52 | 231 | 25 | 204 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
| GenBank | ABD79098.1 | 0 | 52 | 231 | 73 | 252 | Zea m 13 allergen [Zea mays] |
| EMBL | CAA40910.1 | 0 | 52 | 231 | 68 | 247 | polygalacturonase [Zea mays] |
| EMBL | CAA44248.1 | 0 | 52 | 231 | 72 | 251 | polygalacturonase [Zea mays] |
| Swiss-Prot | P35338 | 0 | 52 | 231 | 72 | 251 | PGLR2_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 0.002 | 149 | 224 | 339 | 413 | A Chain A, Human Beta-Hexosaminidase B |
| PDB | 2uvf_A | 0.002 | 149 | 224 | 339 | 413 | A Chain A, Human Beta-Hexosaminidase B |
| PDB | 2uve_B | 0.002 | 149 | 224 | 339 | 413 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 0.002 | 149 | 224 | 339 | 413 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| Hydropathy |
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