| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G338158_T01 |
| Family | GH28 |
| Protein Properties | Length: 437 Molecular Weight: 46157.9 Isoelectric Point: 8.9792 |
| Chromosome | Chromosome/Scaffold: 8 Start: 137040618 End: 137042536 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 52 | 391 | 0 |
| WQVACRVPRATVLVLPSGHRFLLSPVTLQGPCSAKLTLQIDGTVLAPPEMGSWPKPRRPLQWLNFKWLQGFSIQGTGAVDGGQQNLDLDMKCCLSITHFY LQTSTGTGHWHSPGVKPTLIRFYNSFNVSVRNIRISNSPQCHLKFDSSGGIRVKNVTISSPGDSPNTDGIHLQNTKDVEIRSSTIGCGDDCVSIQTGCSN VHMKNVVCNPGHGISLGGLGKDNSLACVSDVVAENIVVQNALYGVRIKTWQGGVGSVRNITFSNVRVANVATPIAIDQFYCDRGGARCANRTGAVAIAGV AYRRVVGTYTFQPLRLACSDARPCTGVTMLDVRLSPAAAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 437 Download |
| MRSSVASAAL LVTCLVVAAA ARSTGRTTLS VLSFGAAGNG VTDDAQALVA AWQVACRVPR 60 ATVLVLPSGH RFLLSPVTLQ GPCSAKLTLQ IDGTVLAPPE MGSWPKPRRP LQWLNFKWLQ 120 GFSIQGTGAV DGGQQNLDLD MKCCLSITHF YLQTSTGTGH WHSPGVKPTL IRFYNSFNVS 180 VRNIRISNSP QCHLKFDSSG GIRVKNVTIS SPGDSPNTDG IHLQNTKDVE IRSSTIGCGD 240 DCVSIQTGCS NVHMKNVVCN PGHGISLGGL GKDNSLACVS DVVAENIVVQ NALYGVRIKT 300 WQGGVGSVRN ITFSNVRVAN VATPIAIDQF YCDRGGARCA NRTGAVAIAG VAYRRVVGTY 360 TFQPLRLACS DARPCTGVTM LDVRLSPAAA GGTVAPLCWN SYGEARGTII QPLSVGCLQR 420 SNGYAMPLTQ PFNYTC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-69 | 56 | 386 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 1.0e-69 | 24 | 421 | 403 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 6.0e-70 | 30 | 408 | 382 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-84 | 27 | 398 | 384 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-100 | 22 | 424 | 404 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD88046.1 | 0 | 5 | 436 | 3 | 372 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAY74476.1 | 0 | 5 | 436 | 3 | 382 | hypothetical protein OsI_02367 [Oryza sativa Indica Group] |
| GenBank | EEE54776.1 | 0 | 5 | 436 | 3 | 500 | hypothetical protein OsJ_02171 [Oryza sativa Japonica Group] |
| RefSeq | XP_002266099.1 | 0 | 29 | 436 | 82 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002457998.1 | 0 | 21 | 436 | 23 | 420 | hypothetical protein SORBIDRAFT_03g025260 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 3e-20 | 20 | 403 | 11 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1bhe_A | 2e-19 | 168 | 386 | 151 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.000000000000004 | 161 | 359 | 88 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000000000004 | 161 | 359 | 88 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000000000004 | 161 | 359 | 88 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
