| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G348602_T01 |
| Family | GH28 |
| Protein Properties | Length: 314 Molecular Weight: 34985.9 Isoelectric Point: 6.8748 |
| Chromosome | Chromosome/Scaffold: 4 Start: 158807822 End: 158810136 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 87 | 273 | 0 |
| TDSCQDVLIENCYISVGDDAIAIKSGWDQYGIAYGRPSSDILIRNVTARSLVSAGISIGSEMSGGVANVTVENVRIWESRRGVRIKTATGRGGYIRNISY RNITFDNVRAGIVIKVDYNEHADDGYDRTAFPDITSISFKGIHGQGVRVPVRAHGSDVIPIKDISFQDMSVGISYKKKHIFQCSYLE | |||
| Full Sequence |
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| Protein Sequence Length: 314 Download |
| MPTFQIDEKY WPLMPALPSY GYGRERKGPR FGSLIHGQNL RDVVITAFEY IIHVLNALAL 60 YQTLEVPVDI HPFFYNILSI LTLALVTDSC QDVLIENCYI SVGDDAIAIK SGWDQYGIAY 120 GRPSSDILIR NVTARSLVSA GISIGSEMSG GVANVTVENV RIWESRRGVR IKTATGRGGY 180 IRNISYRNIT FDNVRAGIVI KVDYNEHADD GYDRTAFPDI TSISFKGIHG QGVRVPVRAH 240 GSDVIPIKDI SFQDMSVGIS YKKKHIFQCS YLEGRVIRPV FPKPCENLDV YDEQGQLVKR 300 AVALNSTELD YDI* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-13 | 92 | 274 | 189 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-13 | 93 | 285 | 199 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-14 | 89 | 257 | 176 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-18 | 82 | 257 | 181 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 6.0e-28 | 88 | 247 | 176 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY87758.1 | 0 | 1 | 302 | 164 | 507 | hypothetical protein OsI_09176 [Oryza sativa Indica Group] |
| GenBank | EAZ24830.1 | 0 | 1 | 302 | 108 | 451 | hypothetical protein OsJ_08610 [Oryza sativa Japonica Group] |
| RefSeq | NP_001140630.1 | 0 | 7 | 313 | 147 | 495 | hypothetical protein LOC100272705 [Zea mays] |
| RefSeq | XP_002326133.1 | 0 | 7 | 313 | 147 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002452925.1 | 0 | 7 | 313 | 152 | 500 | hypothetical protein SORBIDRAFT_04g035020 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3e-20 | 88 | 254 | 244 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-20 | 88 | 254 | 244 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3e-20 | 88 | 254 | 244 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3e-20 | 88 | 254 | 244 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.0000002 | 89 | 259 | 208 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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