| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G435380_T01 |
| Family | GH28 |
| Protein Properties | Length: 420 Molecular Weight: 43589.1 Isoelectric Point: 6.7223 |
| Chromosome | Chromosome/Scaffold: 9 Start: 49132685 End: 49134663 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 68 | 391 | 0 |
| SAACAAEASTVLVPASYVFLVGPIAFTGGDSCEPNVVFQVDGTILANTGSTAWRSGYATQWLEFKSVRGLTIQGCGVIDGQGSHWWSRNPLVDQGQTTTA LRVYQGDNVTVTGITIRSSPKFHLTLDTCRAVEVHGVTIASPGDSPNTDGIHLASSVGVSIHHTTIACGDDCVSIQAGCSDVSIRNVYCGPGHGISVGGL GKGGATATVSDVTVQDVTFNHTMTGVRIKTWQGGSGSVKNVRFSGVRVSAVKTPIVIDQYYCDHTACTNQTSAVAVVGAAYQGVAGTYTQRPVYLACSDA APCSGIHLADIQLQPVKDSGYRVQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 420 Download |
| MGQSIQNVCL ANNATFLSAL LLLAVTTSGG PSLQCCLARS ETHRRPPPTP PDGPHHPPAA 60 PAFADAWSAA CAAEASTVLV PASYVFLVGP IAFTGGDSCE PNVVFQVDGT ILANTGSTAW 120 RSGYATQWLE FKSVRGLTIQ GCGVIDGQGS HWWSRNPLVD QGQTTTALRV YQGDNVTVTG 180 ITIRSSPKFH LTLDTCRAVE VHGVTIASPG DSPNTDGIHL ASSVGVSIHH TTIACGDDCV 240 SIQAGCSDVS IRNVYCGPGH GISVGGLGKG GATATVSDVT VQDVTFNHTM TGVRIKTWQG 300 GSGSVKNVRF SGVRVSAVKT PIVIDQYYCD HTACTNQTSA VAVVGAAYQG VAGTYTQRPV 360 YLACSDAAPC SGIHLADIQL QPVKDSGYRV QGPFCWKAHG DEMRPVEPPV DCLITAGAP* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-63 | 78 | 413 | 341 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 5.0e-65 | 77 | 381 | 312 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 1.0e-70 | 76 | 380 | 308 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-76 | 76 | 380 | 308 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 8.0e-87 | 76 | 409 | 340 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV24999.1 | 0 | 62 | 413 | 107 | 466 | polygalacturonase 2 [Oncidium Gower Ramsey] |
| GenBank | ABV25001.1 | 0 | 62 | 413 | 107 | 466 | polygalacturonase 4 [Oncidium Gower Ramsey] |
| GenBank | ABV25002.1 | 0 | 62 | 413 | 108 | 467 | polygalacturonase 5 [Oncidium Gower Ramsey] |
| GenBank | EAZ00960.1 | 0 | 105 | 419 | 109 | 432 | hypothetical protein OsI_22993 [Oryza sativa Indica Group] |
| GenBank | EAZ37024.1 | 0 | 105 | 419 | 106 | 429 | hypothetical protein OsJ_21369 [Oryza sativa Japonica Group] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-23 | 139 | 328 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-22 | 137 | 386 | 72 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-22 | 137 | 386 | 72 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-22 | 137 | 386 | 72 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-22 | 137 | 386 | 72 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
