| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G454497_T01 |
| Family | GH28 |
| Protein Properties | Length: 246 Molecular Weight: 26056.9 Isoelectric Point: 6.8521 |
| Chromosome | Chromosome/Scaffold: 6 Start: 99441813 End: 99444027 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 3 | 234 | 0 |
| FVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYK DEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVSLLCTAK VPCTGVTMDDVNVEYSGTNNKTMAICTNAKGS | |||
| Full Sequence |
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| Protein Sequence Length: 246 Download |
| MDFVNNGEVS GVTLLNSKFF HMNMYRCKDM LIKDVTVTAP GDSPNTDGIH MGDSSGITIT 60 NTVIGVGDDC ISIGPGTSKV NITGVTCGPG HGISIGSLGR YKDEKDVTDI NVKDCTLKKT 120 MFGVRIKAYE DAASVLTVSK IHYENIKMED SANPIFIDMK YCPNKLCTAN GASKVTVKDV 180 TFKNITGTSS TPEAVSLLCT AKVPCTGVTM DDVNVEYSGT NNKTMAICTN AKGSTKGCLK 240 ELACF* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-53 | 9 | 237 | 229 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 1.0e-55 | 9 | 245 | 237 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-57 | 9 | 245 | 237 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-84 | 3 | 237 | 237 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-92 | 1 | 232 | 232 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PIR | 0 | 1 | 245 | 119 | 363 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
| EMBL | CAA40851.1 | 0 | 1 | 245 | 164 | 408 | polygalacturonase [Zea mays] |
| EMBL | CAA40910.1 | 0 | 1 | 245 | 162 | 406 | polygalacturonase [Zea mays] |
| EMBL | CAA46680.1 | 0 | 1 | 245 | 166 | 410 | polygalacturonase [Zea mays] |
| RefSeq | NP_001105432.1 | 0 | 1 | 245 | 166 | 410 | exopolygalacturonase precursor [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.000000000000002 | 45 | 223 | 152 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000002 | 45 | 223 | 152 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000002 | 45 | 223 | 152 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000002 | 45 | 223 | 152 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.000000000000002 | 45 | 223 | 152 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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