Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma04g05220.2 |
Family | CBM22 |
Protein Properties | Length: 742 Molecular Weight: 82681.6 Isoelectric Point: 6.3009 |
Chromosome | Chromosome/Scaffold: 04 Start: 3979132 End: 3982919 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 28 | 163 | 3.3e-31 |
IIINPQFDDGLNNWSGRGCKIALHDSMGEGKILPKTGKVFASATERTQSWNGIQQEITGRVQRKLAYEVTAVVRIFGNNITTSDVRATLYVQAPDCREQY IGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGP | |||
CBM22 | 198 | 339 | 2.24208e-44 |
NIIENSNLANGTNGWFPLGNCTLSVGTGSPRIIPPIARDSLGPHESLSGRHILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGSRSTGPQNVNVAL SVDNQWVNGGQVEVADDRWHEIGGSFRIEKQPSKVMVYIQGP | |||
GH10 | 395 | 665 | 0 |
VKQVQNDFPIGSCISRSNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWDVDGTVQQWIKSLNKNDLMTA VQNRLNGLLTRYIGKFKHYDVNNEMLHGTFYQDRLGKDIRANMFKIAHQLDPSATLFVNDYHVEDGCDTRSSPEKYIQHVLDLQEQGAPVGGIGIQGHID SPVGPIVCSALDKMGTLGIPIWFTELDVSSTNEYVRADDLEVMLREALAHPAIDGVMLWGFWELFMSRENS |
Full Sequence |
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Protein Sequence Length: 742 Download |
MENLQKINAG NHSETTNKGC VSTEEESIII NPQFDDGLNN WSGRGCKIAL HDSMGEGKIL 60 PKTGKVFASA TERTQSWNGI QQEITGRVQR KLAYEVTAVV RIFGNNITTS DVRATLYVQA 120 PDCREQYIGI ANVQATDKDW VQMQGKFLLN GSPSKVVVYL EGPPPGADIL VNTLVIKHAD 180 KTPPSTPPDC EGAAFGVNII ENSNLANGTN GWFPLGNCTL SVGTGSPRII PPIARDSLGP 240 HESLSGRHIL VTNRTQTWMG PAQMITEKLK LFLTYQVSAW VRIGSRSTGP QNVNVALSVD 300 NQWVNGGQVE VADDRWHEIG GSFRIEKQPS KVMVYIQGPA SGLDLMVAGL QIFAVDRHAR 360 FKYLRRQTDK IRKREIILKF SGLDSIGNLG TLVRVKQVQN DFPIGSCISR SNIDNEDFVD 420 FFVKHFNWAV FGNELKWYWT EPQQGNLNYK DADEMLDLCQ KNKIDTRGHC IFWDVDGTVQ 480 QWIKSLNKND LMTAVQNRLN GLLTRYIGKF KHYDVNNEML HGTFYQDRLG KDIRANMFKI 540 AHQLDPSATL FVNDYHVEDG CDTRSSPEKY IQHVLDLQEQ GAPVGGIGIQ GHIDSPVGPI 600 VCSALDKMGT LGIPIWFTEL DVSSTNEYVR ADDLEVMLRE ALAHPAIDGV MLWGFWELFM 660 SRENSHLVNA EGELNEAGKR YLALKQEWLS HSHGYVDEQG QFSFRGFSGT YNVEVVTLAK 720 KVTKTFVVDK GDSSLVVSID L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-13 | 28 | 165 | 139 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 6.0e-15 | 197 | 342 | 155 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 1.0e-34 | 385 | 655 | 296 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 8.0e-78 | 435 | 680 | 267 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 7.0e-78 | 400 | 685 | 306 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 7e-40 | 1 | 347 | 1 | 345 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
GenBank | AAX33301.1 | 0 | 13 | 741 | 186 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002301133.1 | 0 | 7 | 741 | 314 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 26 | 352 | 1 | 314 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 8e-36 | 27 | 359 | 164 | 491 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1tux_A | 3e-29 | 433 | 654 | 47 | 268 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1x_A | 1e-28 | 433 | 654 | 47 | 268 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1w_A | 1e-28 | 433 | 654 | 47 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1xyz_B | 2e-28 | 404 | 655 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 2e-28 | 404 | 655 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX570690 | 295 | 448 | 742 | 0 |
EX570691 | 281 | 448 | 728 | 0 |
HO789518 | 281 | 441 | 721 | 0 |
EB442796 | 298 | 225 | 522 | 0 |
EB442796 | 130 | 52 | 181 | 0.00000004 |
Sequence Alignments (This image is cropped. Click for full image.) |
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