Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma06g05290.1 |
Family | CBM22 |
Protein Properties | Length: 743 Molecular Weight: 82883.7 Isoelectric Point: 6.3367 |
Chromosome | Chromosome/Scaffold: 06 Start: 3780199 End: 3784537 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 29 | 164 | 1.9e-31 |
IIINPQFDDGLNNWSGRGCKIALHDSMGDGKILPKTGKVFASATERTQSWNGIQQEITGRVQRKLAYEVTAVVRIFGNNVTTSDVRATLYVQAPDLREQY IGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGP | |||
CBM22 | 199 | 340 | 5.60519e-45 |
NIIENSNLANGTNGWFPLGNCTLSVGTGSPRIIPPMARDSLGPHESLSGRYVLVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGNGSSGPQNVNVAL SVDNQWVNGGQVEVADDRWHEIGGSFRIEKQPSKVMVYIQGP | |||
GH10 | 396 | 666 | 0 |
VKQVQNDFPIGSCISRSNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWDVDNTVQQWIKSLNKTDLMTA VQNRLNGLLTRYKGKFKHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQIDPSATLFVNDYHVEDGCDTRSSPEKYIQHILDLKEQGAPVSGIGIQGHID SPVGPIVCSALDKMGTLGIPIWFTELDVSSTNEYVRADDLEVMLRESLAHPAIDGVMLWGFWELFMSRENS |
Full Sequence |
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Protein Sequence Length: 743 Download |
MENLQKINAE NHSEKTTSKG CVSSEDESII INPQFDDGLN NWSGRGCKIA LHDSMGDGKI 60 LPKTGKVFAS ATERTQSWNG IQQEITGRVQ RKLAYEVTAV VRIFGNNVTT SDVRATLYVQ 120 APDLREQYIG IANVQATDKD WVQMQGKFLL NGSPSKVVVY LEGPAPGTDI LVNTFVIKHA 180 DKTPPSTPPD CEGAAFGVNI IENSNLANGT NGWFPLGNCT LSVGTGSPRI IPPMARDSLG 240 PHESLSGRYV LVTNRTQTWM GPAQMITEKL KLFLTYQVSA WVRIGNGSSG PQNVNVALSV 300 DNQWVNGGQV EVADDRWHEI GGSFRIEKQP SKVMVYIQGP ASGVDLMLAG LQIFAVDRHA 360 RFKYLRRQTD KIRKREIILK FSGLDSIGNL GTLVRVKQVQ NDFPIGSCIS RSNIDNEDFV 420 DFFVKHFNWA VFGNELKWYW TEPQQGNLNY KDADEMLDLC QKNKIDTRGH CIFWDVDNTV 480 QQWIKSLNKT DLMTAVQNRL NGLLTRYKGK FKHYDVNNEM LHGSFYQDRL GKDIRANMFK 540 TAHQIDPSAT LFVNDYHVED GCDTRSSPEK YIQHILDLKE QGAPVSGIGI QGHIDSPVGP 600 IVCSALDKMG TLGIPIWFTE LDVSSTNEYV RADDLEVMLR ESLAHPAIDG VMLWGFWELF 660 MSRENSHLVN AEGELNEAGK RYLALKQEWL SHSHGYVDEQ GQFSFRGFSG TYNVEVVTLA 720 KKVTKTFVVD KGDSSLVVSI DL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 2.0e-13 | 29 | 168 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 6.0e-16 | 198 | 343 | 155 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 3.0e-37 | 386 | 656 | 296 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 7.0e-79 | 436 | 681 | 267 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 1.0e-79 | 401 | 686 | 306 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 3e-39 | 1 | 348 | 1 | 345 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
GenBank | AAX33301.1 | 0 | 7 | 742 | 180 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002301133.1 | 0 | 7 | 742 | 314 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 3e-36 | 23 | 348 | 159 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 27 | 353 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 9e-31 | 405 | 656 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 9e-31 | 405 | 656 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 2e-29 | 434 | 655 | 47 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 2e-29 | 434 | 655 | 47 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 7e-29 | 434 | 655 | 47 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX570690 | 295 | 449 | 743 | 0 |
EX570691 | 281 | 449 | 729 | 0 |
EV279695 | 243 | 1 | 243 | 0 |
EB442796 | 298 | 226 | 523 | 0 |
EV279695 | 167 | 199 | 358 | 0.00000000009 |
Sequence Alignments (This image is cropped. Click for full image.) |
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