| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma09g03110.1 |
| Family | AA7 |
| Protein Properties | Length: 394 Molecular Weight: 44077.5 Isoelectric Point: 8.5763 |
| Chromosome | Chromosome/Scaffold: 09 Start: 2193266 End: 2194744 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| AA7 | 43 | 173 | 0 |
| NNIKTRSGGHGFEGRSYISDEPFIMLDMFNLRNITVDVQNEVAVVQAGATLGEVYYRIWEKSDVHGFPAGECHTVGVGGHFGGGGYGNMMRKYGLSIDHI LDAKIVDVKSRILNKESMGEDLFWAIRGGGG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 394 Download |
| MEKPIPLATM LPIVIVYLFS LHASCAAPTT ESVHETFVDC LRNNIKTRSG GHGFEGRSYI 60 SDEPFIMLDM FNLRNITVDV QNEVAVVQAG ATLGEVYYRI WEKSDVHGFP AGECHTVGVG 120 GHFGGGGYGN MMRKYGLSID HILDAKIVDV KSRILNKESM GEDLFWAIRG GGGLHLVISN 180 VGERNKTVRA AVMTKFLGGT EELVSLLEKE LPTLGLKKEN CIEMSWIESA VWWDSFPNGA 240 HPEALLGRKL NSAKFLKRKS DYVKTPISKD GLEWIWKKMI ELRQTSMAFN PNDGRMNKIS 300 ANATAFPHRQ GNLFKIEYSV NWEEPGISAE KNFTIQIRRL HSYMTPFVSK NPRRAFLNYR 360 DLDIGINHHD NNSSTKKGGF MVLSTSITTS TDW* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 7.0e-7 | 40 | 174 | 147 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 1.0e-12 | 29 | 156 | 131 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN81650.1 | 0 | 8 | 366 | 81 | 485 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002267223.1 | 0 | 8 | 366 | 81 | 485 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002268606.1 | 0 | 8 | 366 | 81 | 485 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299028.1 | 0 | 8 | 366 | 79 | 484 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523158.1 | 0 | 45 | 373 | 113 | 494 | Reticuline oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 28 | 379 | 61 | 459 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 28 | 379 | 61 | 459 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 28 | 379 | 59 | 459 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 28 | 379 | 59 | 459 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 0 | 28 | 379 | 59 | 459 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| berberine biosynthesis | RETICULINE-OXIDASE-RXN | EC-1.21.3.3 | reticuline oxidase |
| dehydroscoulerine biosynthesis | RETICULINE-OXIDASE-RXN | EC-1.21.3.3 | reticuline oxidase |
| sanguinarine and macarpine biosynthesis | RETICULINE-OXIDASE-RXN | EC-1.21.3.3 | reticuline oxidase |
