| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.001G230200.2 |
| Family | CBM43 |
| Protein Properties | Length: 461 Molecular Weight: 51412.2 Isoelectric Point: 9.4591 |
| Chromosome | Chromosome/Scaffold: 01 Start: 46676295 End: 46677863 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 372 | 451 | 3.7e-28 |
| WCVAAKGVNETALSSALSYACSQGNKTCDPIQPGKKCFKPDSLFWHASYAFSSYWSQSRKTGATCYFNGLATQTAKDPSK | |||
| GH17 | 24 | 345 | 0 |
| VGVNYGQLGNNLPSPKQSVKLIQSLGAKRVKIYDANHDILNALKGTNLQVCIMVPNEIINNISTSQKLADSWVETNVVPFYSTTKIRYLLVGNEVISGSP KDIWPNIVPAMRKIKKSLKTHGLDKIKVSTSMAMDVLESSFPPSNGTFRSDIADSIVRPLLQFLHRTKSFYFLDVYPYFAWVMDPKNINLEYALFESRTI KYTDPLSNLTYTNLFDQMVDSVVFAMKRLGYPDIRIWIAETGWPNAGDIDQIGANIYNAATYNRNVVKKLTAKPPIGTPARPGWVIPSLIFALYNENQKP GPGTERHFGLLYPNGTKIYGID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 461 Download |
| MALLPLYFFF LFLSVSSGEF SSQVGVNYGQ LGNNLPSPKQ SVKLIQSLGA KRVKIYDANH 60 DILNALKGTN LQVCIMVPNE IINNISTSQK LADSWVETNV VPFYSTTKIR YLLVGNEVIS 120 GSPKDIWPNI VPAMRKIKKS LKTHGLDKIK VSTSMAMDVL ESSFPPSNGT FRSDIADSIV 180 RPLLQFLHRT KSFYFLDVYP YFAWVMDPKN INLEYALFES RTIKYTDPLS NLTYTNLFDQ 240 MVDSVVFAMK RLGYPDIRIW IAETGWPNAG DIDQIGANIY NAATYNRNVV KKLTAKPPIG 300 TPARPGWVIP SLIFALYNEN QKPGPGTERH FGLLYPNGTK IYGIDLSGKT PDSCFEPLPK 360 PDNNEPYKGK IWCVAAKGVN ETALSSALSY ACSQGNKTCD PIQPGKKCFK PDSLFWHASY 420 AFSSYWSQSR KTGATCYFNG LATQTAKDPS KYIFFLVMIT * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 5.0e-19 | 372 | 443 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-32 | 372 | 450 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-117 | 24 | 345 | 323 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM65039.1 | 0 | 13 | 450 | 14 | 449 | putative glucan endo-1-3-beta-glucosidase [Arabidopsis thaliana] |
| EMBL | CBI39470.1 | 0 | 6 | 450 | 11 | 456 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_683538.1 | 0 | 13 | 450 | 14 | 449 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002303070.1 | 0 | 1 | 450 | 5 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002334812.1 | 0 | 1 | 450 | 4 | 454 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 24 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 23 | 347 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 23 | 347 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_B | 0 | 23 | 347 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_A | 0 | 23 | 347 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
