| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.001G230200.3 |
| Family | CBM43 |
| Protein Properties | Length: 387 Molecular Weight: 43173.4 Isoelectric Point: 9.2575 |
| Chromosome | Chromosome/Scaffold: 01 Start: 46676441 End: 46678005 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 297 | 380 | 1.1e-29 |
| WCVAAKGVNETALSSALSYACSQGNKTCDPIQPGKKCFKPDSLFWHASYAFSSYWSQSRKTGATCYFNGLATQTAKDPSFGHCK | |||
| GH17 | 2 | 270 | 0 |
| VPNEIINNISTSQKLADSWVETNVVPFYSTTKIRYLLVGNEVISGSPKDIWPNIVPAMRKIKKSLKTHGLDKIKVSTSMAMDVLESSFPPSNGTFRSDIA DSIVRPLLQFLHRTKSFYFLDVYPYFAWVMDPKNINLEYALFESRTIKYTDPLSNLTYTNLFDQMVDSVVFAMKRLGYPDIRIWIAETGWPNAGDIDQIG ANIYNAATYNRNVVKKLTAKPPIGTPARPGWVIPSLIFALYNENQKPGPGTERHFGLLYPNGTKIYGID | |||
| Full Sequence |
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| Protein Sequence Length: 387 Download |
| MVPNEIINNI STSQKLADSW VETNVVPFYS TTKIRYLLVG NEVISGSPKD IWPNIVPAMR 60 KIKKSLKTHG LDKIKVSTSM AMDVLESSFP PSNGTFRSDI ADSIVRPLLQ FLHRTKSFYF 120 LDVYPYFAWV MDPKNINLEY ALFESRTIKY TDPLSNLTYT NLFDQMVDSV VFAMKRLGYP 180 DIRIWIAETG WPNAGDIDQI GANIYNAATY NRNVVKKLTA KPPIGTPARP GWVIPSLIFA 240 LYNENQKPGP GTERHFGLLY PNGTKIYGID LSGKTPDSCF EPLPKPDNNE PYKGKIWCVA 300 AKGVNETALS SALSYACSQG NKTCDPIQPG KKCFKPDSLF WHASYAFSSY WSQSRKTGAT 360 CYFNGLATQT AKDPSFGHCK FPSVTL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 3.0e-19 | 297 | 368 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 9.0e-36 | 297 | 381 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-95 | 2 | 270 | 270 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM65039.1 | 0 | 1 | 386 | 77 | 460 | putative glucan endo-1-3-beta-glucosidase [Arabidopsis thaliana] |
| EMBL | CBI39470.1 | 0 | 1 | 386 | 81 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_683538.1 | 0 | 1 | 386 | 77 | 460 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002334812.1 | 0 | 1 | 386 | 79 | 465 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002534357.1 | 0 | 1 | 386 | 1 | 387 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 2 | 271 | 54 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 2 | 271 | 54 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 2 | 271 | 54 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 2 | 272 | 55 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 2 | 272 | 55 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT572251 | 302 | 33 | 334 | 0 |
| ES806364 | 351 | 38 | 382 | 0 |
| ES816855 | 272 | 116 | 387 | 0 |
| ES820324 | 274 | 113 | 386 | 0 |
| EX291357 | 356 | 24 | 377 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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