Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.004G097500.1 |
Family | CBM43 |
Protein Properties | Length: 487 Molecular Weight: 53330.9 Isoelectric Point: 5.9217 |
Chromosome | Chromosome/Scaffold: 04 Start: 16011025 End: 16015288 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 363 | 446 | 8.5e-24 |
WCVMKPSAPLDDPQVAQSVSYACGLADCTSLGYGTSCGNLDARGNISYAFNSYFQKNNQFEKACEFPNVSVITKTDPTPTVGNC | |||
GH17 | 23 | 341 | 0 |
IGVNWGTQASHLLPPDTVVRMLRENGIQKVKLFDADYGILKALGKTGIEVMVGIPNDMLASVGGSMKAAEKWVAKNVSEHISSNNVNIRYVAVGNEPFLE TYNGSYLHITLPALSNIQSALIKAGIGSQVKVTVPLNADVYASSNTYPSGGDFRTDIFDPMLKIVKFLNDSNSPFTVNIYPFISLYTDSNFPVEYAFFDG NATPLNDGGTLYYNMFDANLDTLAHALQKNGFGNLPIIVGEIGWPTDGDRNANIEYARRFNQGFMSHISGGKGTPMRPVPIDAYLFSLIDEDEKSIDPGN FERHWGIFYFDGQVKYPLN |
Full Sequence |
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Protein Sequence Length: 487 Download |
MGWITVTIRI VCLFTLLWSV NGIGVNWGTQ ASHLLPPDTV VRMLRENGIQ KVKLFDADYG 60 ILKALGKTGI EVMVGIPNDM LASVGGSMKA AEKWVAKNVS EHISSNNVNI RYVAVGNEPF 120 LETYNGSYLH ITLPALSNIQ SALIKAGIGS QVKVTVPLNA DVYASSNTYP SGGDFRTDIF 180 DPMLKIVKFL NDSNSPFTVN IYPFISLYTD SNFPVEYAFF DGNATPLNDG GTLYYNMFDA 240 NLDTLAHALQ KNGFGNLPII VGEIGWPTDG DRNANIEYAR RFNQGFMSHI SGGKGTPMRP 300 VPIDAYLFSL IDEDEKSIDP GNFERHWGIF YFDGQVKYPL NLGTTNSGAL IPAKGVQYLE 360 RKWCVMKPSA PLDDPQVAQS VSYACGLADC TSLGYGTSCG NLDARGNISY AFNSYFQKNN 420 QFEKACEFPN VSVITKTDPT PTVGNCKFPI MIQPYYESAG RRFGCGQMPL PLVSVLLLLL 480 LTVVQH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-5 | 255 | 333 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-14 | 362 | 428 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-26 | 362 | 448 | 89 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 5.0e-81 | 23 | 341 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38945.1 | 0 | 1 | 484 | 1 | 483 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273826.1 | 0 | 1 | 484 | 83 | 565 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309034.1 | 0 | 23 | 459 | 4 | 439 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331390.1 | 0 | 10 | 461 | 1 | 451 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530371.1 | 0 | 1 | 484 | 1 | 482 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 23 | 342 | 1 | 306 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
PDB | 1aq0_B | 0 | 23 | 342 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 23 | 342 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 0 | 23 | 342 | 2 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_C | 0 | 23 | 342 | 2 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |