| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G224700.1 |
| Family | CBM43 |
| Protein Properties | Length: 463 Molecular Weight: 50650 Isoelectric Point: 7.4932 |
| Chromosome | Chromosome/Scaffold: 06 Start: 47629341 End: 47631194 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 373 | 456 | 1.3e-23 |
| WCEVAPWVNEMSLPAALSNVCSIDNETCAALAPGKDCYEPVSVVWHASYAFSSYWAKFRSQGAICSFNGLARETTVDPSRGRCN | |||
| GH17 | 23 | 346 | 0 |
| IGVNYGREGDNLPSPYESIQIMKSIKVGQIKLNDSNPEILTLLSGTKIHVAVTVPNDDIIQIGSNDSMAEQWVRNNILPHYPDTMIRFVLVGDRVVNSNM DVNGTMEQSLVPAMRGIKSALTAHGVKNVKVSTTLGMDVVQTRFPPSNSTFQSDISDSVMPKLLKFVNGTKSVVFVDVYPYFAWSANPTNISLDFALFGG NITHTDPGSGLVYTNLLDQMLDSVTFAIEKLGFRNIRLAISRTGWPTAGDIDQVGANIYNAATYNRNLIRKMTSKQPLGSPKSPGLIIPTFISSLYDENR KIGPETERHWGMLHTNGTPVYEID | |||
| Full Sequence |
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| Protein Sequence Length: 463 Download |
| MALLPLLFSS LLVVSLAEMS GKIGVNYGRE GDNLPSPYES IQIMKSIKVG QIKLNDSNPE 60 ILTLLSGTKI HVAVTVPNDD IIQIGSNDSM AEQWVRNNIL PHYPDTMIRF VLVGDRVVNS 120 NMDVNGTMEQ SLVPAMRGIK SALTAHGVKN VKVSTTLGMD VVQTRFPPSN STFQSDISDS 180 VMPKLLKFVN GTKSVVFVDV YPYFAWSANP TNISLDFALF GGNITHTDPG SGLVYTNLLD 240 QMLDSVTFAI EKLGFRNIRL AISRTGWPTA GDIDQVGANI YNAATYNRNL IRKMTSKQPL 300 GSPKSPGLII PTFISSLYDE NRKIGPETER HWGMLHTNGT PVYEIDLTGN RKISEYKPLP 360 PAVNNVPYKG KLWCEVAPWV NEMSLPAALS NVCSIDNETC AALAPGKDCY EPVSVVWHAS 420 YAFSSYWAKF RSQGAICSFN GLARETTVDP SRGRCNFPSV TV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 8.0e-13 | 372 | 443 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-27 | 372 | 457 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-105 | 23 | 346 | 325 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM64490.1 | 0 | 19 | 462 | 33 | 476 | beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| EMBL | CAA49513.1 | 0 | 15 | 462 | 30 | 474 | beta-1,3-glucanase homologue [Brassica napus] |
| EMBL | CBI39470.1 | 0 | 6 | 462 | 12 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_193144.1 | 0 | 15 | 462 | 34 | 478 | MEE48 (maternal effect embryo arrest 48); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002298669.1 | 0 | 7 | 462 | 7 | 462 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 23 | 347 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 23 | 347 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 23 | 347 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 22 | 348 | 1 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 22 | 348 | 1 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
