Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.007G287700.1 |
Family | CBM43 |
Protein Properties | Length: 480 Molecular Weight: 52242.1 Isoelectric Point: 4.7139 |
Chromosome | Chromosome/Scaffold: 07 Start: 49429599 End: 49433185 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 368 | 449 | 1.9e-25 |
WCVFNPNANDLSKLADNINYACTFSDCTALGYGSSCNILDANGNASYAFNMYYQVQNQDDMACNFQGLATVITHNPSQGTCN | |||
GH17 | 27 | 345 | 0 |
LGVNWGTMASHKLPPKTVVQMLKDNGIKKVKLFDADSTTMNALAGSDIEVMVAIPNDQLLAMNSYKRAKDWVRRNVTRYNFDGGVNIKYVAVGNEPFLTT YNGSFINITFPALENIQNALNEAGVGDSIKATVPSNADVYNSPESNPVPSAGRFRPDISGLMTQIVEFLAKNGAPFTINIYPFLSLYGNDDFPFNYAFFD GGNPIVDNGIQYTNVFDANFDTLVSSLRAIGHGDMTIIVGEVGWPTDGDKNANIANAQRFYNGLMPRLAGNVGTPLRPGYLEVYLFGLLDEDVKSVAPGN FERHWGIYRYDGQPKFPLD |
Full Sequence |
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Protein Sequence Length: 480 Download |
MGNSCFLGIL VTISLCLQLF GGGVHGLGVN WGTMASHKLP PKTVVQMLKD NGIKKVKLFD 60 ADSTTMNALA GSDIEVMVAI PNDQLLAMNS YKRAKDWVRR NVTRYNFDGG VNIKYVAVGN 120 EPFLTTYNGS FINITFPALE NIQNALNEAG VGDSIKATVP SNADVYNSPE SNPVPSAGRF 180 RPDISGLMTQ IVEFLAKNGA PFTINIYPFL SLYGNDDFPF NYAFFDGGNP IVDNGIQYTN 240 VFDANFDTLV SSLRAIGHGD MTIIVGEVGW PTDGDKNANI ANAQRFYNGL MPRLAGNVGT 300 PLRPGYLEVY LFGLLDEDVK SVAPGNFERH WGIYRYDGQP KFPLDLSGQN QNRFLIPAQN 360 VEYLPQKWCV FNPNANDLSK LADNINYACT FSDCTALGYG SSCNILDANG NASYAFNMYY 420 QVQNQDDMAC NFQGLATVIT HNPSQGTCNF IIQIASSSFA IGPSLIGMTF FAVIATVLL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 4.0e-5 | 259 | 337 | 83 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-19 | 367 | 437 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 7.0e-32 | 367 | 449 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 4.0e-71 | 40 | 345 | 309 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_176656.1 | 0 | 28 | 456 | 26 | 454 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_179534.1 | 0 | 24 | 458 | 18 | 452 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002277003.1 | 0 | 15 | 454 | 12 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319699.1 | 0 | 21 | 479 | 17 | 477 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525445.1 | 0 | 1 | 468 | 1 | 468 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 27 | 347 | 3 | 315 | A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence |
PDB | 3ur8_A | 0 | 27 | 347 | 3 | 315 | A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence |
PDB | 3ur7_B | 0 | 27 | 347 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 27 | 347 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 27 | 347 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |