Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G223600.1 |
Family | CBM22 |
Protein Properties | Length: 766 Molecular Weight: 86084 Isoelectric Point: 6.2243 |
Chromosome | Chromosome/Scaffold: 09 Start: 17414629 End: 17419927 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 51 | 187 | 4.2e-28 |
NIILNPTFENELSNWSGKGCNILLHESMEDGKILPLYGKFFASATNRTRSWNGIEQEITGRVRPKLAYEVTAIVRIYGGNVADANIQATLWVQSQDINEQ YIKIAISQATDKGWVQLQGKFLLNGSPLKVIIFLEGP | |||
CBM22 | 222 | 363 | 9.4e-38 |
NIIENSNLDDGINGWFPLGNCSLNMEFGSPIELPSMARNSLGMQERLSGRYILVTNRADTWMGPAQMISGKLKLYLTYQVSAWVKIGPGSTSPQIVNVAL SIDGNWVNGGQVEFNNESWHEVGGSFRIDKQPSNVMVYIQGP | |||
GH10 | 421 | 696 | 0 |
QIQNSFPFGSCITRSSIDNEDLVRFLEKNFNWVVFGNELKWSWTEPQQGNFNYKDADELLDFCKNNNLEVRGHCIFWEVEYAIQPWVQGLNKSDLTTAVQ NRLTDLVTRYKGKFRHYDVDNEMLHGSFYKDRLGKDIQATMFRTSHQLDPSATLFVNDYHIEDGSDVRSSPEEYIRQILDLQRQGAPVGGIGLQGHIDSP VGPIVSSALDKVGTLGLPIWFTELDVSSANEFIRADDLEVMLREAFAHPAVEGIILWGFWELYMSRENAHLVNAEG |
Full Sequence |
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Protein Sequence Length: 766 Download |
TFEILLLFSP DIFGTIESVF LPNLPALETN PSFHVFDQST RKGHIANGSN NIILNPTFEN 60 ELSNWSGKGC NILLHESMED GKILPLYGKF FASATNRTRS WNGIEQEITG RVRPKLAYEV 120 TAIVRIYGGN VADANIQATL WVQSQDINEQ YIKIAISQAT DKGWVQLQGK FLLNGSPLKV 180 IIFLEGPPPG TDILINRLVV KHAEKAPPPL RPFMKNEAFG VNIIENSNLD DGINGWFPLG 240 NCSLNMEFGS PIELPSMARN SLGMQERLSG RYILVTNRAD TWMGPAQMIS GKLKLYLTYQ 300 VSAWVKIGPG STSPQIVNVA LSIDGNWVNG GQVEFNNESW HEVGGSFRID KQPSNVMVYI 360 QGPAAGVDLM VAGLYIFPVD RRARFKLLKK QTDKIRKRDL ILKFSSSKAD NVSGAFVKVE 420 QIQNSFPFGS CITRSSIDNE DLVRFLEKNF NWVVFGNELK WSWTEPQQGN FNYKDADELL 480 DFCKNNNLEV RGHCIFWEVE YAIQPWVQGL NKSDLTTAVQ NRLTDLVTRY KGKFRHYDVD 540 NEMLHGSFYK DRLGKDIQAT MFRTSHQLDP SATLFVNDYH IEDGSDVRSS PEEYIRQILD 600 LQRQGAPVGG IGLQGHIDSP VGPIVSSALD KVGTLGLPIW FTELDVSSAN EFIRADDLEV 660 MLREAFAHPA VEGIILWGFW ELYMSRENAH LVNAEGKINA AGKRYLALKK EWLSRARGYI 720 DVQGEFRFRG FYGTYNIEIN SPTMKINRTF VVDKGESPLA INIDL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 6.0e-13 | 50 | 191 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 1.0e-14 | 221 | 365 | 153 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 2.0e-37 | 421 | 679 | 283 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 7.0e-78 | 459 | 704 | 267 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 2.0e-79 | 420 | 709 | 310 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002283550.1 | 7e-34 | 18 | 376 | 62 | 416 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002283550.1 | 0 | 46 | 765 | 262 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 46 | 765 | 330 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 50 | 376 | 1 | 314 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002510024.1 | 0 | 39 | 765 | 101 | 827 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 3e-34 | 428 | 678 | 18 | 268 | A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex With Unhydrolysed And Covalently Linked 2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside At 1.9 A |
PDB | 1i1w_A | 3e-34 | 428 | 678 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1tux_A | 6e-34 | 428 | 678 | 18 | 268 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 8e-34 | 428 | 678 | 18 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1k6a_A | 5e-33 | 428 | 678 | 18 | 268 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX570690 | 295 | 472 | 766 | 0 |
EB442796 | 298 | 249 | 546 | 0 |
GO850973 | 328 | 347 | 674 | 0 |
EL428755 | 279 | 426 | 704 | 0 |
EB442796 | 116 | 85 | 200 | 0.0000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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