| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.010G068800.1 |
| Family | CBM43 |
| Protein Properties | Length: 993 Molecular Weight: 111072 Isoelectric Point: 6.0248 |
| Chromosome | Chromosome/Scaffold: 10 Start: 8952467 End: 8960743 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 872 | 953 | 1.4e-24 |
| WCVLDATATDLDELPESVSYACSLSDCTALGYGSSCNQLTAKGNASYAFNMYYQVNNQHVWDCDFSGLAIVTDDNPSEEGCQ | |||
| GH17 | 529 | 849 | 0 |
| IGVNWGTMSTHQLPPGKVVKMLRDNGVHKLKLFEYNEEIMTALTGTDIEVMVGIPNSMLKLMSVDPAAAASWVYNNVTGYCYDGGVNIKYVAVGNEPFLQ TYNGTYLQYTLPALKNIQRALDESGVKCRYKTTVPFNADIYDSPESNPVPSAGDFRPEVKDLTIEIVQFLYLHDAPFTVNIYPYLSLYGNDYFPIEFAFF DGLSKPLRDGNNVYKNAFDANLDTLIYALSKAGFPDMEVIVGEVGWPTDGDKNANTRNAKRFNQGLIKHALSGNGTPARKGNIEVYLFSLIDENAKSIEP GGFERHWGIFEFDGKPKYQLD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 993 Download |
| MLDESKFDVN FKLLALRIPR ELCKTATRLL NGYLLDKPRV KPITEDPTSE KTRYMILSEK 60 VQNPDLSDIP SQKLDELKKL CEIEVVPYSL TLGYSYWTAD HILKQILPLG VEVPSSFETI 120 VKGECQIRYL SNVGMLNYFL LVLSYNWLII WSYSCHVAHL NIHDELLRFK DVIAKVIYDK 180 NYPRIKTVVN KVGTITNEFR VPKFEILAGE SDMVTEVKQY GATFKLDYSL VYWNSRLEHE 240 HIRLVSQFCP GETICDMFAG IGPFAIPAAQ KGCLVYANDL NPDSIHYLKI NAKINKVDDC 300 VVAYNMDARK FISHLMAKPI CAIDLESDNS MKAVAGNDVK SEAEDVQNST RTIDGSVVAG 360 KRPPDCFTEE SGNAHSGTKK KGNAHKRMKG SILQAKPWEH VDHVIMNLPA SALQFLDAFR 420 AIISRKNWRG PLPLVHCYCF IRANETQEFI TSEAESALNA KIKDPVFHKV RDVAPNKAMF 480 CLSFRLPEAC FIEDVANSTC HNTGRQFYNH LLALLLLAIM TLVPNGNGIG VNWGTMSTHQ 540 LPPGKVVKML RDNGVHKLKL FEYNEEIMTA LTGTDIEVMV GIPNSMLKLM SVDPAAAASW 600 VYNNVTGYCY DGGVNIKYVA VGNEPFLQTY NGTYLQYTLP ALKNIQRALD ESGVKCRYKT 660 TVPFNADIYD SPESNPVPSA GDFRPEVKDL TIEIVQFLYL HDAPFTVNIY PYLSLYGNDY 720 FPIEFAFFDG LSKPLRDGNN VYKNAFDANL DTLIYALSKA GFPDMEVIVG EVGWPTDGDK 780 NANTRNAKRF NQGLIKHALS GNGTPARKGN IEVYLFSLID ENAKSIEPGG FERHWGIFEF 840 DGKPKYQLDL TGLELEKGLA PVEDVKYQTK RWCVLDATAT DLDELPESVS YACSLSDCTA 900 LGYGSSCNQL TAKGNASYAF NMYYQVNNQH VWDCDFSGLA IVTDDNPSEE GCQFPVMIAF 960 AHSSLLLHNN GGLLDVLLRI IGGFIVLISF LI* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG2520 | COG2520 | 7.0e-7 | 402 | 485 | 87 | + Predicted methyltransferase [General function prediction only] | ||
| COG2520 | COG2520 | 6.0e-54 | 156 | 315 | 161 | + Predicted methyltransferase [General function prediction only] | ||
| pfam02475 | Met_10 | 1.0e-58 | 156 | 317 | 164 | + Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-74 | 529 | 849 | 323 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003723 | RNA binding |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008033 | tRNA processing |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28113.1 | 0 | 1 | 981 | 2 | 968 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002281500.1 | 0 | 510 | 988 | 10 | 482 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324967.1 | 0 | 529 | 969 | 9 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515573.1 | 0 | 530 | 991 | 31 | 489 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| RefSeq | XP_002515574.1 | 0 | 1 | 497 | 1 | 536 | conserved hypothetical protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 529 | 850 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 529 | 851 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 529 | 851 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_B | 0 | 529 | 851 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_A | 0 | 529 | 851 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
