Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G013800.2 |
Family | CBM53 |
Protein Properties | Length: 1087 Molecular Weight: 123547 Isoelectric Point: 6.7071 |
Chromosome | Chromosome/Scaffold: 11 Start: 976559 End: 982911 |
Description | starch synthase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM53 | 270 | 352 | 8.9e-32 |
EIEVFFNRSLSNLKNEPDVLIMGSFNDWRWRSFTVRLNKTHLKGDWWSCLIRVPKEAYKMDFVFFNGQNVYENNDKNDFCITV | |||
CBM53 | 606 | 693 | 1.7e-32 |
SMVTIFYNPANTVLNGKPEVWFRCSFNRWTHSMGPLPPQRMLPVDNGFHVKATVKVPLDAYMMDFVFSEREDGGIFDNNGGTDYHIRV | |||
CBM53 | 444 | 533 | 5.8e-35 |
EKVRLYYNKSSSHLTHANELWIHGGHNNWNDGLTIAEKLVKSEKEGGDWWYAEVVIPDGALVLDWVFANGPPKAATIYDNNNRQDFHAIV | |||
GT5 | 704 | 1070 | 0 |
HVVHIAVEMAPIAKVGGLGDIVTSLSRAVQDLNHNVNIVFPKYDCLKFEHVTDFHYQRCYSWGGTEIEVWFGKVEGLSVYFLDPQNGFFSTGCVYGRGND AQRFGFFCHAALEFLHQSGFHPDIIHCHDWSSAPVAWLLKDHYMHYDGLSKSRVVFTIHNLEFGAHFIAKAMVYADKATTVSHTYSKEVAGNPAIAPHLH KFHGILNGIDLDIWDPFNDKFIPVSYNSENVIEGKQAAKKALQQRLGLKKSDLPLVGIISRLTHQKGIHLIKHAISRTLELNGQVVLLGSAPDPRIQNDF VNLANQLHSSHADRARLCLNYDEPLSHLIYAGSDFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGA |
Full Sequence |
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Protein Sequence Length: 1087 Download |
MEASLQLQRF SSYGCFKIEP FLDSFPSVKT TQFTPWRSKC SVICLSHRVT ASAADFSKRR 60 QRRLSKGATP KGFTSKSRMS TQKRKQQKNN EQKEDSSIPK LSEFVEPNNR EIELKVDEVE 120 NKEEKEDLSS IGKELDIRLS NHNVVNGNGN GMILGDVVGL EKKEISSENG TASIGLEKKE 180 IGSENGTVST LRDVVSEGKH IDDTKTGEIV TVEVESVEVD EKTVQDKSLQ LKLEMETNLR 240 KQEIEGLADE NFLRGDKFFV YPQIIKPDGE IEVFFNRSLS NLKNEPDVLI MGSFNDWRWR 300 SFTVRLNKTH LKGDWWSCLI RVPKEAYKMD FVFFNGQNVY ENNDKNDFCI TVEGGIDVFA 360 FEDILVEEKR MELEKIAKEQ AEKERQEEEQ RRIGVEKAAS EAERAQARIE IERRREILQQ 420 LMKKAAQSFD NIWFIEPKEF KGAEKVRLYY NKSSSHLTHA NELWIHGGHN NWNDGLTIAE 480 KLVKSEKEGG DWWYAEVVIP DGALVLDWVF ANGPPKAATI YDNNNRQDFH AIVQKSIPEE 540 QFWVEEEHRI FEKLQKDRKL REEAIHAKAE KTTQMKGEMK ERTLKRFLLS QKNVVYTEPL 600 DIHAGSMVTI FYNPANTVLN GKPEVWFRCS FNRWTHSMGP LPPQRMLPVD NGFHVKATVK 660 VPLDAYMMDF VFSEREDGGI FDNNGGTDYH IRVVGGIVKE PPMHVVHIAV EMAPIAKVGG 720 LGDIVTSLSR AVQDLNHNVN IVFPKYDCLK FEHVTDFHYQ RCYSWGGTEI EVWFGKVEGL 780 SVYFLDPQNG FFSTGCVYGR GNDAQRFGFF CHAALEFLHQ SGFHPDIIHC HDWSSAPVAW 840 LLKDHYMHYD GLSKSRVVFT IHNLEFGAHF IAKAMVYADK ATTVSHTYSK EVAGNPAIAP 900 HLHKFHGILN GIDLDIWDPF NDKFIPVSYN SENVIEGKQA AKKALQQRLG LKKSDLPLVG 960 IISRLTHQKG IHLIKHAISR TLELNGQVVL LGSAPDPRIQ NDFVNLANQL HSSHADRARL 1020 CLNYDEPLSH LIYAGSDFIL VPSIFEPCGL TQLTAMRYGS IPVVRKTGGA YSSLNSVLLS 1080 VIITLC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02939 | PLN02939 | 1.0e-119 | 703 | 1069 | 413 | + transferase, transferring glycosyl groups | ||
TIGR02095 | glgA | 5.0e-130 | 703 | 1069 | 410 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PRK00654 | glgA | 2.0e-142 | 703 | 1069 | 408 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 6.0e-148 | 704 | 1069 | 411 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
PLN02316 | PLN02316 | 0 | 225 | 1071 | 848 | + synthase/transferase |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
GO:2001070 | starch binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACT09059.1 | 0 | 16 | 1077 | 23 | 1153 | starch synthase III precursor [Solanum lycopersicum] |
DDBJ | BAF49176.1 | 0 | 1 | 1077 | 1 | 1088 | starch synthase III [Phaseolus vulgaris] |
RefSeq | XP_002269011.1 | 0 | 61 | 1077 | 32 | 1065 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002305571.1 | 0 | 170 | 1077 | 21 | 942 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518476.1 | 0 | 65 | 1077 | 6 | 983 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 703 | 1069 | 1 | 400 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 703 | 1069 | 1 | 400 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 703 | 1069 | 1 | 400 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 703 | 1069 | 1 | 400 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 703 | 1069 | 1 | 400 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778003 | 715 | 225 | 939 | 0 |
HO794758 | 487 | 585 | 1071 | 0 |
ES819035 | 292 | 710 | 1001 | 0 |
HO794758 | 107 | 259 | 356 | 0.0001 |
HO794758 | 124 | 419 | 540 | 0.12 |
Sequence Alignments (This image is cropped. Click for full image.) |
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