Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.012G043900.1 |
Family | CBM43 |
Protein Properties | Length: 500 Molecular Weight: 54455.6 Isoelectric Point: 8.2836 |
Chromosome | Chromosome/Scaffold: 12 Start: 5495756 End: 5499120 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 385 | 464 | 7.6e-25 |
WCIANPNRDLSEVANHMKLACNVADCTTLNYGGSCNAIGAKGNVSYAFNSYYQLQMQKEKSCNFDGLGMVTFLDPSVGDC | |||
GH17 | 46 | 364 | 0 |
IGVNWGTISFHKLKPSTVVDLLKDNKIQKVKLFEADPLVLRALMGSGIQVMVGIPNEMLAALSSSPAAADLWVRQNVSAYVGKGGADIRFIAVGNEPFLT SYNGQFQSYVIPAMANLQQSLVRANLAGYIKLVVPCNADAYEGNVPSQGAFRPELTQIMTQLVSFLNSNGSPFVVNIYPFLSLYGNSEFPQDYAFFEGTT HPVIDGANTYTNAFDGNYDTLIAALSKMGYGQMPIVIGEVGWPTDGAVGANLTAAEVFNQGLIKHVLSNKGTPLRPAVPPMDVYLFSLLDEGAKSTLPGN FERHWGIFSFDGQAKYALD |
Full Sequence |
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Protein Sequence Length: 500 Download |
MKYHCRRRPQ ERKMSVPTSV SPPLLVSVAV MTVMFSGLVS VAESAIGVNW GTISFHKLKP 60 STVVDLLKDN KIQKVKLFEA DPLVLRALMG SGIQVMVGIP NEMLAALSSS PAAADLWVRQ 120 NVSAYVGKGG ADIRFIAVGN EPFLTSYNGQ FQSYVIPAMA NLQQSLVRAN LAGYIKLVVP 180 CNADAYEGNV PSQGAFRPEL TQIMTQLVSF LNSNGSPFVV NIYPFLSLYG NSEFPQDYAF 240 FEGTTHPVID GANTYTNAFD GNYDTLIAAL SKMGYGQMPI VIGEVGWPTD GAVGANLTAA 300 EVFNQGLIKH VLSNKGTPLR PAVPPMDVYL FSLLDEGAKS TLPGNFERHW GIFSFDGQAK 360 YALDLGLGNK KLKNAKNVQY LPARWCIANP NRDLSEVANH MKLACNVADC TTLNYGGSCN 420 AIGAKGNVSY AFNSYYQLQM QKEKSCNFDG LGMVTFLDPS VGDCRFLVGV TDTSASFRPY 480 QRWVVGCILM LWQVWAFRV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0003 | 190 | 356 | 180 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 4.0e-16 | 384 | 453 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-29 | 385 | 466 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-71 | 46 | 361 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08871.1 | 0 | 42 | 481 | 3 | 450 | Glycoside hydrolase, family 17; X8 [Medicago truncatula] |
EMBL | CAB10499.1 | 0 | 26 | 497 | 32 | 500 | glucanase like protein [Arabidopsis thaliana] |
RefSeq | NP_193451.2 | 0 | 26 | 499 | 5 | 475 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002329964.1 | 0 | 25 | 497 | 8 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525026.1 | 0 | 42 | 499 | 22 | 480 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 46 | 365 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 1.4013e-45 | 46 | 365 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 1.4013e-45 | 46 | 365 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 1.4013e-45 | 46 | 365 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 1.4013e-45 | 46 | 365 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |