Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G202800.1 |
Family | CBM43 |
Protein Properties | Length: 485 Molecular Weight: 52778 Isoelectric Point: 5.0229 |
Chromosome | Chromosome/Scaffold: 13 Start: 51382896 End: 51385512 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 369 | 450 | 1e-24 |
WCMFNPNAKDIGKLTDNIKYACTFSDCTALGYGSSCNNLDANGNASYAFNMYYQVQNQKDMACNFQGLAIITTQNISQGACN | |||
GH17 | 28 | 346 | 0 |
LGVNWGTMATHKLPPETVVQMLKDNGIKKVKLFDADSKTMDALSGSDLEVMVAIPNDQLLAMNSYDRAKQWVKKNITIYNFKGGVNIKYVAVGNEPFLKS YNGSFINTTVPALQNIQNALNDAGVGDTIKATVPLNADVYNSPESNPVPSAGRFRTDISGPMTQMVDFLAKNGAPFTVNIYPFLSLYGNDDFPFNYAFFD GGNPITDNGIKYTNVFDANFDTLVSALKAVGHGDMPIIVGEVGWPTDGDKNGNMANAQRFYNGLLPRLAANTGTPLRPGYIEVYLFGLIDEDAKSVAPGN FERHWGIFRYDGQPKFPLD |
Full Sequence |
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Protein Sequence Length: 485 Download |
MGNSGFLATL LLPTFLCVHL FGGFVDGLGV NWGTMATHKL PPETVVQMLK DNGIKKVKLF 60 DADSKTMDAL SGSDLEVMVA IPNDQLLAMN SYDRAKQWVK KNITIYNFKG GVNIKYVAVG 120 NEPFLKSYNG SFINTTVPAL QNIQNALNDA GVGDTIKATV PLNADVYNSP ESNPVPSAGR 180 FRTDISGPMT QMVDFLAKNG APFTVNIYPF LSLYGNDDFP FNYAFFDGGN PITDNGIKYT 240 NVFDANFDTL VSALKAVGHG DMPIIVGEVG WPTDGDKNGN MANAQRFYNG LLPRLAANTG 300 TPLRPGYIEV YLFGLIDEDA KSVAPGNFER HWGIFRYDGQ PKFPLDLSGQ NQNQFLIGAK 360 DVKYLQQQWC MFNPNAKDIG KLTDNIKYAC TFSDCTALGY GSSCNNLDAN GNASYAFNMY 420 YQVQNQKDMA CNFQGLAIIT TQNISQGACN FIVQIASSSS SFTSVSPLMV GLAIFIVLTS 480 YLLI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00925 | GTP_cyclohydro2 | 0.007 | 47 | 82 | 36 | + GTP cyclohydrolase II. GTP cyclohydrolase II catalyzes the first committed step in the biosynthesis of riboflavin. | ||
COG5309 | COG5309 | 2.0e-6 | 254 | 338 | 89 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 5.0e-16 | 368 | 438 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-30 | 368 | 451 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-75 | 28 | 346 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ90287.1 | 0 | 25 | 478 | 25 | 480 | beta-1,3-glucanase, acidic [Coffea arabica] |
RefSeq | NP_179534.1 | 0 | 25 | 461 | 18 | 454 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002277003.1 | 0 | 16 | 455 | 12 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319699.1 | 0 | 22 | 484 | 17 | 478 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525445.1 | 0 | 1 | 472 | 1 | 468 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 28 | 348 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur8_A | 0 | 28 | 348 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_B | 0 | 28 | 348 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 28 | 348 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3f55_D | 0 | 28 | 348 | 2 | 316 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |