| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.013G221700.1 |
| Family | CBM43 |
| Protein Properties | Length: 488 Molecular Weight: 53055.7 Isoelectric Point: 6.9846 |
| Chromosome | Chromosome/Scaffold: 13 Start: 54170800 End: 54174024 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 362 | 444 | 3.8e-24 |
| WCVLSPSVGVSDPNALAQSISQACQYADCTSIGPGSSCSNLDPQRNASYAFNMYYQTMDQRKDACSFNNLSTVTTVDPSQPPC | |||
| GH17 | 25 | 342 | 0 |
| ACNWGLQSTHPLPPNIVVKLLKDNGFDKVKLFEADPGALKALGKSGIQVMVGIPNDMLASLAGSAGNAEAWVQQNVSNYISKYGTDIRLVAIGNEPFLHS YKDMFTQTTLPALQNIQAALGKAGLGKKVKTTVPLNADVYQTDSGLPSGGDFRPDIRDLMLKIIKFIQDNGGILTINIYPFLSLQADPNFPKEFAFFNNK ANPVVDGPIVYTNVYDANFDTLISALEKNGFGQMPVVIGEVGWPTDCDPNANIDNARRFNQGLLDRIIRGQGTPKRRAPPDVYIFSLIDEDNKSVEPGNF ERHWGIFNYDGSIKYPLD | |||
| Full Sequence |
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| Protein Sequence Length: 488 Download |
| MGGFRLFWLL FVWVLGIERG VSGLACNWGL QSTHPLPPNI VVKLLKDNGF DKVKLFEADP 60 GALKALGKSG IQVMVGIPND MLASLAGSAG NAEAWVQQNV SNYISKYGTD IRLVAIGNEP 120 FLHSYKDMFT QTTLPALQNI QAALGKAGLG KKVKTTVPLN ADVYQTDSGL PSGGDFRPDI 180 RDLMLKIIKF IQDNGGILTI NIYPFLSLQA DPNFPKEFAF FNNKANPVVD GPIVYTNVYD 240 ANFDTLISAL EKNGFGQMPV VIGEVGWPTD CDPNANIDNA RRFNQGLLDR IIRGQGTPKR 300 RAPPDVYIFS LIDEDNKSVE PGNFERHWGI FNYDGSIKYP LDLGKGKALT QAKGVKYLAR 360 QWCVLSPSVG VSDPNALAQS ISQACQYADC TSIGPGSSCS NLDPQRNASY AFNMYYQTMD 420 QRKDACSFNN LSTVTTVDPS QPPCRFEIMI DIGKHELSVS NKVPAAGFGS LLLVSLMLVL 480 GLANGVH* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-6 | 256 | 334 | 83 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 8.0e-16 | 361 | 433 | 83 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 7.0e-28 | 361 | 446 | 88 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-67 | 24 | 342 | 322 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI27737.1 | 0 | 23 | 486 | 24 | 486 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_197587.1 | 0 | 6 | 458 | 12 | 471 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277217.1 | 0 | 25 | 486 | 18 | 478 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309443.1 | 0 | 23 | 448 | 1 | 425 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516181.1 | 0 | 3 | 457 | 19 | 474 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 5.60519e-45 | 28 | 343 | 6 | 315 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 3f55_C | 5.60519e-45 | 28 | 343 | 6 | 315 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 3f55_B | 5.60519e-45 | 28 | 343 | 6 | 315 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 3f55_A | 5.60519e-45 | 28 | 343 | 6 | 315 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 3em5_D | 5.60519e-45 | 28 | 343 | 6 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
