Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G270800.1 |
Family | CBM43 |
Protein Properties | Length: 485 Molecular Weight: 53468.6 Isoelectric Point: 6.551 |
Chromosome | Chromosome/Scaffold: 13 Start: 58178670 End: 58181478 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 366 | 445 | 1.1e-24 |
WCVVNNNKDLSNASASALEACSTSDCTALSPGGSCSNISWPSNISYAFNSYYQQNDQRADSCDFGGLGLITTVDPSVDTC | |||
GH17 | 23 | 346 | 0 |
IGVNWGTMSSHPLPPPKVVELLKSNEVSKVKLFDADPLVLQALSGSNIVVTLGIPNSMLKTLNSSRKAAESWVHDNVTRYFSHGEAGVRIEYVAVGDEPF LQSYGDQFHPFVIGAAMNIQAALTKANLAGEVKVVVPCSFDTFVSESGRPSKGHFRTDLNKTMIELLTFLSKHHSPFFVTISPFISFQQNKNISLDFSLF KENARHHNDSHRTYKNSFDLSYDTLVSALSKIGFPEIDIVVARIGWPTDGAANATSSIAETFMKGLIDHLHSKTGTPLRPRNPPIETFMFSLLDEDHRSI TSGNFERHWGVFTFDGQAKYHFNF |
Full Sequence |
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Protein Sequence Length: 485 Download |
MYPFPVFLFL TILCLLGSTA DAIGVNWGTM SSHPLPPPKV VELLKSNEVS KVKLFDADPL 60 VLQALSGSNI VVTLGIPNSM LKTLNSSRKA AESWVHDNVT RYFSHGEAGV RIEYVAVGDE 120 PFLQSYGDQF HPFVIGAAMN IQAALTKANL AGEVKVVVPC SFDTFVSESG RPSKGHFRTD 180 LNKTMIELLT FLSKHHSPFF VTISPFISFQ QNKNISLDFS LFKENARHHN DSHRTYKNSF 240 DLSYDTLVSA LSKIGFPEID IVVARIGWPT DGAANATSSI AETFMKGLID HLHSKTGTPL 300 RPRNPPIETF MFSLLDEDHR SITSGNFERH WGVFTFDGQA KYHFNFGQGT KNLVNAQFVE 360 YLAPKWCVVN NNKDLSNASA SALEACSTSD CTALSPGGSC SNISWPSNIS YAFNSYYQQN 420 DQRADSCDFG GLGLITTVDP SVDTCRFFVE LQTSHSTSAH EAYIFLRIIL LLACLFSCLL 480 GFTW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 5.0e-5 | 259 | 337 | 83 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-15 | 365 | 433 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-30 | 365 | 447 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 4.0e-66 | 23 | 346 | 325 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF95444.1 | 0 | 23 | 479 | 35 | 488 | Glycosyl hydrolases family 17 protein, expressed [Oryza sativa (japonica cultivar-group)] |
EMBL | CBI28434.1 | 0 | 18 | 479 | 18 | 481 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_200656.2 | 0 | 13 | 458 | 16 | 455 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002269108.1 | 0 | 9 | 476 | 12 | 481 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313970.1 | 0 | 19 | 471 | 18 | 470 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 23 | 346 | 2 | 315 | A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) |
PDB | 3f55_C | 0 | 23 | 346 | 2 | 315 | A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) |
PDB | 3f55_B | 0 | 23 | 346 | 2 | 315 | A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) |
PDB | 3f55_A | 0 | 23 | 346 | 2 | 315 | A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) |
PDB | 3em5_D | 0 | 23 | 346 | 2 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |