| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g47010.1 |
| Family | CBM22 |
| Protein Properties | Length: 757 Molecular Weight: 81554.8 Isoelectric Point: 5.2392 |
| Chromosome | Chromosome/Scaffold: 3 Start: 26576496 End: 26579282 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 22 | 161 | 1.6e-31 |
| NIILNPEFDSGLDNWSGSGCKIELHDSLDDGKVLAVSGKYFVAATGRTDTWNGVQQDVTSRLQRKLLYEVAATVRLSGAAATPSPCEVRATVAVQNTDGR QQYISVAKSPAVSDKEWVQLQGKFLLNGTVAKAAIYIEGP | |||
| CBM22 | 196 | 350 | 2.2e-40 |
| NILQNSDLDDGVNGWFGLGSCALSVHGGAPRVLPPMARQSLSPLDGDDGDGDEPLNGKHIHVTNRAQTWMGPAQVITDRVTPYATYQVSAWVRVGGQQAA GKPQNINVAVAVDSQWLNGGQVMALDERWYEIGGSFRVESSSTPPSRVMLYVQGP | |||
| GH10 | 411 | 694 | 0 |
| VSNSFPLGACIMRTNMDNEDYVDFFTKHFNWAVFGNELKWYWTEPEKGQLNYADADDLLKLCADHGMCVRGHCIFWEVDSAVQQWVKALPADELSAAVAS RINGLLTRYKGKFRHYDVNNEMLHGSFYQDKLGAGARAAMFRAASELDPDALLFVNDYNVEGACVDVRATPEAYIAQVTGLQEQGAAVGGVGLQGHVTAP VGAVVRAALDRLAVLGLPLWFTELDVSSANEHVRADDLEAMLREAYAHPAVDGVVLWGFWELSMSRDDAHLVDAEGEVNEAGRR | |||
| Full Sequence |
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| Protein Sequence Length: 757 Download |
| MAIGGDAGQV VGDGGAGAGD DNIILNPEFD SGLDNWSGSG CKIELHDSLD DGKVLAVSGK 60 YFVAATGRTD TWNGVQQDVT SRLQRKLLYE VAATVRLSGA AATPSPCEVR ATVAVQNTDG 120 RQQYISVAKS PAVSDKEWVQ LQGKFLLNGT VAKAAIYIEG PPAGVDLLLD SLVVKHAQKA 180 TPAPAPDFKN LEYGANILQN SDLDDGVNGW FGLGSCALSV HGGAPRVLPP MARQSLSPLD 240 GDDGDGDEPL NGKHIHVTNR AQTWMGPAQV ITDRVTPYAT YQVSAWVRVG GQQAAGKPQN 300 INVAVAVDSQ WLNGGQVMAL DERWYEIGGS FRVESSSTPP SRVMLYVQGP DPGVDLMVAG 360 LRVFPVDRKA RAKHLRKLTD KVRKRDVVVK VTAAAGGAAA ADGVEVRVRQ VSNSFPLGAC 420 IMRTNMDNED YVDFFTKHFN WAVFGNELKW YWTEPEKGQL NYADADDLLK LCADHGMCVR 480 GHCIFWEVDS AVQQWVKALP ADELSAAVAS RINGLLTRYK GKFRHYDVNN EMLHGSFYQD 540 KLGAGARAAM FRAASELDPD ALLFVNDYNV EGACVDVRAT PEAYIAQVTG LQEQGAAVGG 600 VGLQGHVTAP VGAVVRAALD RLAVLGLPLW FTELDVSSAN EHVRADDLEA MLREAYAHPA 660 VDGVVLWGFW ELSMSRDDAH LVDAEGEVNE AGRRLLQLKR EWLTRAHGRA DGNGEFRFRG 720 HHGAYHVDVV TPAGAKISQE FTVDKDDAPL VLNITV* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 3.0e-11 | 195 | 352 | 166 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-14 | 417 | 572 | 165 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam02018 | CBM_4_9 | 2.0e-21 | 22 | 163 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| smart00633 | Glyco_10 | 8.0e-49 | 448 | 695 | 269 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-49 | 412 | 699 | 308 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005575 | cellular_component |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY91350.1 | 0 | 1 | 756 | 1 | 756 | hypothetical protein OsI_12971 [Oryza sativa Indica Group] |
| RefSeq | NP_001050876.1 | 0 | 1 | 756 | 1 | 756 | Os03g0672900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002301133.1 | 0 | 16 | 754 | 329 | 1047 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 21 | 363 | 1 | 314 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002466685.1 | 0 | 2 | 756 | 3 | 748 | hypothetical protein SORBIDRAFT_01g012210 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 4e-30 | 391 | 669 | 13 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 4e-30 | 391 | 669 | 13 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1nq6_A | 3e-28 | 417 | 668 | 15 | 269 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 2e-27 | 446 | 668 | 47 | 268 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 3msg_B | 2e-27 | 412 | 650 | 13 | 258 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EB442796 | 313 | 223 | 535 | 0 |
| CX609126 | 211 | 22 | 232 | 0 |
| EL428755 | 281 | 415 | 695 | 0 |
| EB442796 | 118 | 57 | 174 | 0.000000009 |
| CX609126 | 174 | 196 | 363 | 0.0000001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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